Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31056.Seq
(428 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for ... 126 3e-29
BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31 p... 126 3e-29
BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein. 126 3e-29
BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31 p... 126 3e-29
AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein. 126 3e-29
AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31 p... 126 3e-29
X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31 pro... 123 2e-28
AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31 p... 54 2e-07
>X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for
ribosomal protein L31. ).
Length = 125
Score = 126 bits (304), Expect = 3e-29
Identities = 56/75 (74%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Frame = +3
Query: 36 MTMAKPXGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 212
M AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTP
Sbjct: 1 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
Query: 213 DIRVDTRLNKFLWSR 257
D+R+DTRLNK +W++
Sbjct: 61 DVRIDTRLNKAVWAK 75
Score = 60.1 bits (139), Expect = 3e-09
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2
Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 400
G+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 76 GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 126 bits (304), Expect = 3e-29
Identities = 56/75 (74%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Frame = +3
Query: 36 MTMAKPXGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 212
M AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTP
Sbjct: 1 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
Query: 213 DIRVDTRLNKFLWSR 257
D+R+DTRLNK +W++
Sbjct: 61 DVRIDTRLNKAVWAK 75
Score = 60.1 bits (139), Expect = 3e-09
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2
Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 400
G+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 76 GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein.
Length = 121
Score = 126 bits (304), Expect = 3e-29
Identities = 56/75 (74%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Frame = +3
Query: 36 MTMAKPXGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 212
M AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTP
Sbjct: 1 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
Query: 213 DIRVDTRLNKFLWSR 257
D+R+DTRLNK +W++
Sbjct: 61 DVRIDTRLNKAVWAK 75
Score = 48.8 bits (111), Expect = 8e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +2
Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 376
G+RNVP+ N+DEDS +KL+TLVTYVPV + K
Sbjct: 76 GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115
>BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 126 bits (304), Expect = 3e-29
Identities = 56/75 (74%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Frame = +3
Query: 36 MTMAKPXGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 212
M AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTP
Sbjct: 1 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
Query: 213 DIRVDTRLNKFLWSR 257
D+R+DTRLNK +W++
Sbjct: 61 DVRIDTRLNKAVWAK 75
Score = 60.1 bits (139), Expect = 3e-09
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2
Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 400
G+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 76 GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein.
Length = 125
Score = 126 bits (304), Expect = 3e-29
Identities = 56/75 (74%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Frame = +3
Query: 36 MTMAKPXGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 212
M AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTP
Sbjct: 1 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
Query: 213 DIRVDTRLNKFLWSR 257
D+R+DTRLNK +W++
Sbjct: 61 DVRIDTRLNKAVWAK 75
Score = 60.1 bits (139), Expect = 3e-09
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2
Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 400
G+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 76 GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 126 bits (304), Expect = 3e-29
Identities = 56/75 (74%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Frame = +3
Query: 36 MTMAKPXGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 212
M AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTP
Sbjct: 1 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
Query: 213 DIRVDTRLNKFLWSR 257
D+R+DTRLNK +W++
Sbjct: 61 DVRIDTRLNKAVWAK 75
Score = 60.1 bits (139), Expect = 3e-09
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2
Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 400
G+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 76 GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31
protein.
Length = 121
Score = 123 bits (297), Expect = 2e-28
Identities = 54/71 (76%), Positives = 66/71 (92%), Gaps = 1/71 (1%)
Frame = +3
Query: 48 KPXGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 224
K GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+
Sbjct: 1 KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRI 60
Query: 225 DTRLNKFLWSR 257
DTRLNK +W++
Sbjct: 61 DTRLNKAVWAK 71
Score = 60.1 bits (139), Expect = 3e-09
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2
Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 400
G+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 72 GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 119
>AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31
protein.
Length = 47
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 266 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 400
NVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 1 NVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,671,737
Number of Sequences: 237096
Number of extensions: 970814
Number of successful extensions: 5267
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5267
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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