Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31056.Seq
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...   101   3e-22
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)            99   1e-21
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            98   3e-21
At4g17250.1 68417.m02594 expressed protein                             28   2.3  
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse...    28   2.3  
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse...    28   2.3  
At2g19860.1 68415.m02322 hexokinase 2 (HXK2) identical to hexoki...    27   5.4  
At1g32900.1 68414.m04053 starch synthase, putative similar to st...    27   5.4  
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ...    26   9.4  

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score =  101 bits (241), Expect = 3e-22
 Identities = 45/66 (68%), Positives = 56/66 (84%)
 Frame = +3

Query: 60  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 239
           E+KG+    EVVTREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK+MGT D+RVD +LN
Sbjct: 3   EKKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 240 KFLWSR 257
           K +WS+
Sbjct: 61  KQIWSK 66



 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 400
           G+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 67  GIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score = 98.7 bits (235), Expect = 1e-21
 Identities = 44/66 (66%), Positives = 55/66 (83%)
 Frame = +3

Query: 60  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 239
           E+KG+    EV+TREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK MGT D+RVD +LN
Sbjct: 3   EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 240 KFLWSR 257
           K +WS+
Sbjct: 61  KQIWSK 66



 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 400
           G+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 67  GIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 44/64 (68%), Positives = 51/64 (79%)
 Frame = +3

Query: 66  KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 245
           KGK    EVVTREYT+NLH+RLH   FKK+AP AIKEIRKFA K MGT D+RVD +LNK 
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62

Query: 246 LWSR 257
           +WS+
Sbjct: 63  IWSK 66



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 257 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 409
           G+R  P           NDDED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 67  GIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At4g17250.1 68417.m02594 expressed protein
          Length = 416

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 108 TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 227
           TV   KR   + +KKR   A+K+   + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208


>At3g19400.2 68416.m02460 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 290

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 102 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 245
           ++ V   K  +G+G K+R  +  K+  KF ++    PD   +  L +F
Sbjct: 46  QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93


>At3g19400.1 68416.m02461 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 362

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 102 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 245
           ++ V   K  +G+G K+R  +  K+  KF ++    PD   +  L +F
Sbjct: 46  QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93


>At2g19860.1 68415.m02322 hexokinase 2 (HXK2) identical to
           hexokinase 2 [Arabidopsis thaliana] Swiss-Prot:P93834
          Length = 502

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 302 FVKASHGHGREHF*LPRPKEFV*ASVYSNVRSSHLFFSELSDFFD 168
           +V+ +H   + H  LP+  E V    + N RSSHL  +E     D
Sbjct: 259 YVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHSLD 303


>At1g32900.1 68414.m04053 starch synthase, putative similar to
           starch synthase SP:Q42857 from [Ipomoea batatas]
          Length = 610

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 60  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 224
           E+KG   + E +++   +N+   + G G KK   + ++   KF  K +G     V
Sbjct: 412 EQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNV 466


>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 376

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 87  EVVT--REYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 245
           EV+T   ++ V   K  +G+G K+R  +  K+  K  E+    P+   +  LNKF
Sbjct: 36  EVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKF 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,474,516
Number of Sequences: 28952
Number of extensions: 153551
Number of successful extensions: 312
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)