Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31053.Seq
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   116   2e-27
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   116   2e-27
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    33   0.049
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   1.4  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    28   1.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   5.6  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   5.6  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.9  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   9.9  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  116 bits (280), Expect = 2e-27
 Identities = 53/75 (70%), Positives = 62/75 (82%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 211 DTGNFSWGSECSTRK 255
           D+GNFSWGSE  ++K
Sbjct: 61  DSGNFSWGSEGVSKK 75



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 42/87 (48%), Positives = 55/87 (63%)
 Frame = +3

Query: 246 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 425
           + +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T  
Sbjct: 73  SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATST 131

Query: 426 EEAIINKKRSQKTARKYLARQRLAKVE 506
                   +S+   RK+ AR   +KV+
Sbjct: 132 P-----NPKSKHVQRKHSARLGDSKVD 153



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/46 (67%), Positives = 36/46 (78%)
 Frame = +2

Query: 509 ALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 646
           ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 155 ALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  116 bits (280), Expect = 2e-27
 Identities = 53/75 (70%), Positives = 62/75 (82%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 211 DTGNFSWGSECSTRK 255
           D+GNFSWGSE  ++K
Sbjct: 61  DSGNFSWGSEGVSKK 75



 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 42/87 (48%), Positives = 55/87 (63%)
 Frame = +3

Query: 246 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 425
           + +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T  
Sbjct: 73  SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATAT 131

Query: 426 EEAIINKKRSQKTARKYLARQRLAKVE 506
                   +S+   RK+ AR   +KV+
Sbjct: 132 P-----TPKSKHVQRKHSARLGDSKVD 153



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/46 (67%), Positives = 36/46 (78%)
 Frame = +2

Query: 509 ALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 646
           ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 155 ALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 623 DRTRVLCLLRCNHRRDHTDLGDSPRKPANALCGIALLEPL 504
           D   + CLLR  H+RD  +  +  RK  N L G  LLE +
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLEEM 473


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 43   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 216
            RD  +K +  G       K+ +   EL    +N  +  Q+   + S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 217  GNFSWGSECSTRKP 258
            G+     E +  KP
Sbjct: 1143 GDLMAVKEVALHKP 1156


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 46  DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 207
           + W K   T  K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 19  DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 135
           + TK G  +     RRA     A  RKK K + GRP +N
Sbjct: 3   ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 367 YHCLNGVASTTTIAFLTRVFVRTNS 293
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = -1

Query: 338 YNNCILDKGLCTHQFIVRCIIH-------NINDTGLRVEHSDPQEKLPVSRRSARYLVFP 180
           + N +  +   +H FI R +I+       +I D G  ++  + ++ L  + +   Y+++P
Sbjct: 540 FENSLYHQSFSSHWFISRLLINPIRMLCWHITDVGKTLDLGEAEKLLKYNHKQCPYIIYP 599


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  DHWHKRRATGGKRAPIRKKRKYE 114
           D W   +A G   +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,585
Number of Sequences: 5004
Number of extensions: 53375
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)