Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31053.Seq
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              122   4e-28
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           36   0.030
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           30   1.5  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   2.6  
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           29   4.5  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)                28   6.0  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  122 bits (293), Expect = 4e-28
 Identities = 58/84 (69%), Positives = 67/84 (79%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
           + RIIDVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+
Sbjct: 59  KARIIDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQ 118

Query: 432 AIINKKRSQKTARKYLARQRLAKV 503
            I+NKKRS    RK  AR+  AKV
Sbjct: 119 EILNKKRSNHCTRKLEARKANAKV 142



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 40/56 (71%), Positives = 47/56 (83%)
 Frame = +1

Query: 88  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 255
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRK 59



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 35/47 (74%), Positives = 43/47 (91%)
 Frame = +2

Query: 512 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
           +EEQF TGRL ACV+SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 146 MEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 261 IIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 377
           I+ V+++ +N E +    +VK +IV VD  PF  W++ +
Sbjct: 75  ILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 148 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSE-CSTRKPVSLMLCIMHLTMN 297
           P++I   ++ GG+TK +ALR++ G ++  S+      P+   L +MH   N
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPI---LSVMHSFAN 84


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
 Frame = -2

Query: 376  CDSYHCLNGVASTTTIAFLTRVFVRTNSLL--DALYTTSMIRVCELNIPIPKRSYRCPDA 203
            C  Y C   V +TT +A +  ++++  S +   A+      R C  N             
Sbjct: 700  CPGYKCATPVDNTTILALVPELYLKYTSQVRQKAVEANPSWRWCPGNKCSLVNKVTKRSC 759

Query: 202  AHGT*YFHHVNERSGFAEGRAWCLQRDALTHTSSSCVWAHVSHRWPFAY 56
             HG  +  +       A G+ WC +    TH  + C  A    +   AY
Sbjct: 760  YHGNTFLDYGGVPVACACGKTWCSECQEETHWPAKCEIAQRFRKQTKAY 808


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 64  RATGGKRAPIRKKRKYELGRPAANTRLGP 150
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 7   VFFFDPTKMGISRDHWHKRRATG--GKRAPIRKKRKYELG 120
           VF   P+K   S+    K+ ATG  GK AP +KK+K+  G
Sbjct: 474 VFSDSPSKNKESKSTKRKKSATGGEGKEAPAKKKQKHNDG 513


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 520 AIPHRAFAGLRGESPRSVW 576
           A PH A +G+R  SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 520 AIPHRAFAGLRGESPRSVW 576
           A PH A +G+R   PRS+W
Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 520 AIPHRAFAGLRGESPRSVW 576
           A PH A +G+R   PRS+W
Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 520 AIPHRAFAGLRGESPRSVW 576
           A PH A +G+R   PRS+W
Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 22  PTKMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 168
           P    +S D W K++    K+  I+KKR+  +    A    LG QR+  +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432


>SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)
          Length = 387

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 272 NINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTEW 159
           ++ D  +RV+H +  EK  +S      + F PR +T W
Sbjct: 114 SLRDFSIRVKHRNRMEKSTLSEFLETRVCFTPRRKTLW 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,629,434
Number of Sequences: 59808
Number of extensions: 430766
Number of successful extensions: 1250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)