Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31053.Seq
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   128   3e-30

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/87 (66%), Positives = 70/87 (80%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
           +TRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + 
Sbjct: 75  KTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDN 134

Query: 432 AIINKKRSQKTARKYLARQRLAKVEGL 512
           AI+NKKRS  T +KY  RQ+ A V+ L
Sbjct: 135 AILNKKRSHHTMKKYTERQKTAAVDAL 161



 Score =  113 bits (272), Expect = 1e-25
 Identities = 51/75 (68%), Positives = 59/75 (78%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 211 DTGNFSWGSECSTRK 255
           D+GNFSW SE +TRK
Sbjct: 61  DSGNFSWASEQTTRK 75



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 34/47 (72%), Positives = 43/47 (91%)
 Frame = +2

Query: 512 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
           L EQF+TGRLLA ++S PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 162 LIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,243
Number of Sequences: 27780
Number of extensions: 313862
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)