Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31053.Seq
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   109   1e-24
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   109   2e-24
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    31   0.69 
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    30   1.6  
At5g44010.1 68418.m05386 expressed protein                             29   2.1  
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.8  
At4g04400.1 68417.m00634 hypothetical protein contains Pfam prof...    28   6.5  

>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  109 bits (263), Expect = 1e-24
 Identities = 53/76 (69%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 208 LDTGNFSWGSECSTRK 255
           LDTGNFSWGSE  TRK
Sbjct: 61  LDTGNFSWGSEAVTRK 76



 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 37/47 (78%), Positives = 44/47 (93%)
 Frame = +2

Query: 512 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
           LEEQF +GRLLAC+ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 159 LEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205



 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 44/79 (55%), Positives = 53/79 (67%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
           +TRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE
Sbjct: 76  KTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEE 135

Query: 432 AIINKKRSQKTARKYLARQ 488
                K+S    RK   RQ
Sbjct: 136 V----KKSNHVQRKLEMRQ 150


>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  109 bits (262), Expect = 2e-24
 Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
           MGISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 208 LDTGNFSWGSECSTRK 255
           LDTGN+SWGSE +TRK
Sbjct: 61  LDTGNYSWGSEATTRK 76



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 52/89 (58%), Positives = 61/89 (68%), Gaps = 10/89 (11%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT--- 419
           +TR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T   
Sbjct: 76  KTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKD 135

Query: 420 --EAEEAII----NKKRSQKTARKYLARQ 488
             E EEA +      K+S    RK  +RQ
Sbjct: 136 GEEGEEAAVAAPEEVKKSNHLLRKIASRQ 164



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 35/47 (74%), Positives = 44/47 (93%)
 Frame = +2

Query: 512 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 652
           +E+QF +GRLLAC++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 173 IEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 376 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVCELNIPIP 230
           C  Y  L GV S+  +A L+ +  R  SL+   +  ++  VC L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 10  FFFDPTKMGISRDHWHKRRATGGK--RAPIRKKRKYELGRPAANTRLGPQR 156
           F  DP K    ++ W KRR   G+  R   R K++ +LGR     R+  +R
Sbjct: 206 FAMDPEKNKAEKEAWKKRRRKRGRLLRKKRRTKQRRKLGRRRRKQRMQRRR 256


>At5g44010.1 68418.m05386 expressed protein 
          Length = 357

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 326 ILDKGLCTHQFIVRCIIHNINDTGLRV--EHSDPQEKLPVSRRSARYL 189
           I+D  LC  Q +V C+  +  +TGL++  +H +P+E L      A +L
Sbjct: 98  IIDGKLCKRQSVVSCV--SALETGLKILSKHIEPKESLHREDNDATFL 143


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 297 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 425
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g04400.1 68417.m00634 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 735

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 332 NCILDKGLCTHQFIVRCIIHNINDTGL-RVEHSDPQEKLP 216
           N I  KG+C      RCI++ I+D  +  +E+  P+  +P
Sbjct: 530 NMIWWKGMCEMDISSRCIVNEISDEEVHEIENEVPETAVP 569


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,757
Number of Sequences: 28952
Number of extensions: 296343
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)