Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31049.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0437 - 19084990-19087695                                         28   8.2  
04_01_0135 + 1516410-1516422,1516439-1516730,1516753-1516881,151...    28   8.2  

>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 67  LIVVCLEI*LICMQLNF*YTGEVLFSC*IEFP 162
           LI +C    L+C++LN  Y GE L  C   FP
Sbjct: 789 LISLCKMANLVCLELNCAYDGEALRFCAEWFP 820


>04_01_0135 +
           1516410-1516422,1516439-1516730,1516753-1516881,
           1516954-1516963
          Length = 147

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 550 YIPYXSLECEIKAVGSGT--CSHHKSRPTKKXPYIR*QCYGPCGRK 681
           Y PY S +    A G G   CSH +SR       +  Q Y  C RK
Sbjct: 98  YAPYRSEDLAPGAGGGGWIFCSHRQSRRAASDTVMVFQLYSCCSRK 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,667,950
Number of Sequences: 37544
Number of extensions: 377854
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)