Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31049.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58109| Best HMM Match : Methylase_S (HMM E-Value=2.4)               29   2.7  
SB_56872| Best HMM Match : RVT_1 (HMM E-Value=2.7e-30)                 29   3.6  
SB_51839| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)                    29   3.6  
SB_46263| Best HMM Match : RVT_1 (HMM E-Value=2.2e-30)                 29   3.6  
SB_38578| Best HMM Match : RVT_1 (HMM E-Value=0.018)                   29   3.6  
SB_26855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_25574| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.9)                  29   3.6  
SB_1034| Best HMM Match : RVT_1 (HMM E-Value=2.2e-30)                  29   3.6  
SB_59736| Best HMM Match : RVT_1 (HMM E-Value=8.2e-31)                 29   3.6  
SB_54423| Best HMM Match : RVT_1 (HMM E-Value=7.7e-32)                 29   3.6  
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_16993| Best HMM Match : RVT_1 (HMM E-Value=0.35)                    29   3.6  
SB_7284| Best HMM Match : F5_F8_type_C (HMM E-Value=7.3e-10)           29   3.6  
SB_3080| Best HMM Match : Methylase_S (HMM E-Value=2.6)                29   3.6  
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)                28   8.4  
SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)                 28   8.4  

>SB_58109| Best HMM Match : Methylase_S (HMM E-Value=2.4)
          Length = 228

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N+CI K ++     +GEW P+++
Sbjct: 198 SLTGLYNQCIRKGEWPEAWKKGEWNPVYK 226


>SB_56872| Best HMM Match : RVT_1 (HMM E-Value=2.7e-30)
          Length = 575

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 275 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 303


>SB_51839| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
          Length = 337

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 230 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 258


>SB_46263| Best HMM Match : RVT_1 (HMM E-Value=2.2e-30)
          Length = 490

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 81  SLTGLYNECIRKGEWPEAWKKGEWNPVYK 109


>SB_38578| Best HMM Match : RVT_1 (HMM E-Value=0.018)
          Length = 472

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 203 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 231


>SB_26855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 178 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 206


>SB_25574| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.9)
          Length = 324

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 275 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 303


>SB_1034| Best HMM Match : RVT_1 (HMM E-Value=2.2e-30)
          Length = 558

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 81  SLTGLYNECIRKGEWPEAWKKGEWNPVYK 109


>SB_59736| Best HMM Match : RVT_1 (HMM E-Value=8.2e-31)
          Length = 326

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 26  SLTGLYNECIRKGEWPEAWKKGEWNPVYK 54


>SB_54423| Best HMM Match : RVT_1 (HMM E-Value=7.7e-32)
          Length = 775

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 470 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 498


>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567  ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
            +L G  N CI K ++     +GEW P+++
Sbjct: 1347 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 1375


>SB_16993| Best HMM Match : RVT_1 (HMM E-Value=0.35)
          Length = 237

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 13  SLTGLYNECIRKGEWPEAWKKGEWNPVYK 41


>SB_7284| Best HMM Match : F5_F8_type_C (HMM E-Value=7.3e-10)
          Length = 725

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 501 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 529


>SB_3080| Best HMM Match : Methylase_S (HMM E-Value=2.6)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P+++
Sbjct: 178 SLTGLYNECIRKGEWPEAWKKGEWNPVYK 206


>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 407 GYGFTVASIKTSEQHKVFGT-GINTDSQIGYHSPREIILWNFCLAMHLFI 553
           GYG  +        + V G  G+N +  +  H   E++L + CLA  +F+
Sbjct: 548 GYGLGIVQSARQFANLVAGLQGVNLEGMLLNHCKEELLLGDNCLARSIFV 597


>SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 210 PIFQYPISKSTDRRVMCGDLLRQVLWVSTSHVARKGKKV 326
           PI + P S+S++RRV       +V W+S++   R+ ++V
Sbjct: 151 PILKSPRSQSSERRVHFSARSPKVFWISSTLNRRRQRRV 189


>SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)
          Length = 751

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 567 ALVGYINRCIAKQKFQRMISRGEWYPIWE 481
           +L G  N CI K ++     +GEW P ++
Sbjct: 299 SLTGLYNECIRKGEWPEAWKKGEWNPFYK 327


>SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 310 LATWEVDTQSTCLSKSPHMTRLS 242
           + TW VD  S C S SPH   L+
Sbjct: 88  IRTWNVDVNSLCCSWSPHAVWLA 110


>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
          Length = 469

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 472 QYRFPNWIPFTTRNHPLELLLSYAPIYIP 558
           + +F NWIP+     PLELL  Y P Y P
Sbjct: 407 EIQFENWIPYFCFVLPLELLQHY-PSYRP 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,839,273
Number of Sequences: 59808
Number of extensions: 459105
Number of successful extensions: 1036
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)