Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31047.Seq
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          113   1e-25
11_01_0155 - 1287003-1287452                                          113   1e-25
07_03_0227 - 15398371-15398925                                         29   1.6  
11_06_0598 - 25391923-25393197                                         28   5.0  
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    28   5.0  
06_03_0062 + 16116893-16117029,16117472-16117760                       27   8.7  
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963...    27   8.7  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  113 bits (271), Expect = 1e-25
 Identities = 50/60 (83%), Positives = 57/60 (95%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90  AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149



 Score =   99 bits (238), Expect = 1e-21
 Identities = 43/83 (51%), Positives = 60/83 (72%)
 Frame = +1

Query: 7   REPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 186
           R P   VQ FGRK TA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 187 SMVXIRVTVKGGGHVAQVYAIRQ 255
             + +R+ V+GGG  +Q+YAIRQ
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQ 89


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  113 bits (271), Expect = 1e-25
 Identities = 50/60 (83%), Positives = 57/60 (95%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90  AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149



 Score =   99 bits (238), Expect = 1e-21
 Identities = 43/83 (51%), Positives = 60/83 (72%)
 Frame = +1

Query: 7   REPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 186
           R P   VQ FGRK TA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 187 SMVXIRVTVKGGGHVAQVYAIRQ 255
             + +R+ V+GGG  +Q+YAIRQ
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQ 89


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 157 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRW 53
           +P +C A  W  P+   A  H  FH     C+ + RW
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRW 59


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 415 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 263
           LA    PP  L S      TS L  + T +  ++    S+TY    AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304


>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 100 NGRPLDLVEPRLLQYKLQEPILLL 171
           NG PLD V+P+L ++  +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830


>06_03_0062 + 16116893-16117029,16117472-16117760
          Length = 141

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 112 MGARLHAAFHDHA--CNTQLRWRXSYVRILGRPGW 14
           + ARL A   +HA   N + RWR      LG+ GW
Sbjct: 26  LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60


>05_03_0424 -
           13795721-13795900,13796134-13796202,13796260-13796385,
           13797224-13798166,13798263-13799248
          Length = 767

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 222 WSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYD 344
           WS S  +   + +  AL+  Y+K  + A  + + D ++  D
Sbjct: 279 WSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKD 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,518,484
Number of Sequences: 37544
Number of extensions: 313968
Number of successful extensions: 807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)