Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31045.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    25   7.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 270 KADVYDSDSNHSLIESNKSKTSYVVTEKSLPNADVYESDSSHSENVKEK 416
           +AD   SDS+ S+  SNK+    +   K+  N+     DSS+SE+  E+
Sbjct: 113 EADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQ-ESVDSSNSESSDEE 160


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 639 KARDIGHN*VLTEAFATGTFLSFIVKXMTSIWTTVSLISSVRLIQSHQCFQF 484
           K  D+G +   +EA A  +F+S   K +  ++  V L     LI SH+CFQ+
Sbjct: 847 KQADVGVSLSDSEACAAASFVSK-KKSIKDVFN-VLLEGRCSLILSHRCFQY 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,454
Number of Sequences: 5004
Number of extensions: 34445
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)