Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31043.Seq
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0724 - 27147479-27147706,27147830-27147920,27148002-271480... 33 0.15
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868... 33 0.15
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 31 0.47
07_03_1163 - 24439976-24440023,24440562-24440597,24440932-244410... 30 1.1
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 30 1.1
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 30 1.4
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 29 1.9
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 29 2.5
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 29 3.3
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 29 3.3
03_05_0700 + 26920743-26920771,26920880-26920991,26921205-269213... 29 3.3
01_06_0303 + 28324155-28325045,28326208-28326321 29 3.3
03_05_0525 + 25200207-25200580,25201061-25201751 28 4.4
03_05_0522 - 25161595-25162285,25162394-25163139 28 4.4
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842... 28 4.4
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 27 7.7
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 27 7.7
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 27 7.7
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 27 7.7
>03_05_0724 -
27147479-27147706,27147830-27147920,27148002-27148060,
27148197-27148312,27148389-27148472,27148677-27148824,
27148958-27149103,27149610-27149729,27149900-27149998,
27150787-27150828,27150915-27151017
Length = 411
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 172
F+ DGK T + D L+IWD T + + T TCL T+ SQ++
Sbjct: 216 FTPDGKLICTGSDDASLRIWDPRTAQSRHVVRGHGYHTDGLTCLSVTSDSQTI 268
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLK 97
FS DG ++ + DGR+ +W+T T L+
Sbjct: 132 FSSDGNLLASGSFDGRINVWNTATRTLQ 159
>01_03_0084 -
12286416-12286514,12286632-12286683,12286771-12286871,
12287498-12287650,12287703-12287762,12287872-12287998,
12288581-12288708,12289196-12289291,12289473-12289526,
12289603-12289689,12290954-12291057,12291163-12291246,
12291374-12291422,12291523-12291886,12292186-12292226
Length = 532
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTP 112
A+FS DG T + D +K+WDT+T Q + P
Sbjct: 359 AIFSTDGSRVITASSDCTVKVWDTKTTDCLQTFKP 393
Score = 30.7 bits (66), Expect = 0.82
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
A FS DG+Y + + DG +++WD + LK++
Sbjct: 224 ARFSPDGQYLVSCSVDGIIEVWDYISGKLKKD 255
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FSEDGK+ + + DG L+IWD
Sbjct: 495 FSEDGKWLISSSMDGTLRIWD 515
>07_03_1163 -
24439976-24440023,24440562-24440597,24440932-24441018,
24441349-24441492,24441782-24441916,24442215-24442279,
24442395-24442477,24442607-24442642,24443343-24443449,
24443558-24443658,24443750-24443909
Length = 333
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 334 VTALDWSRKYGLYSCTKDSRVYEWXIEDGSVKQTYNI 444
V+A+ W + +YS + D V +W ++ G K+T+N+
Sbjct: 243 VSAVTWPERQTIYSASWDHSVRQWDVQTG--KETWNM 277
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWD 76
+ +S G Y T +KDG L+IWD
Sbjct: 303 QVRYSSTGSLYVTASKDGSLRIWD 326
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 253 NGKLLIYSXSQAKIINVWVPAKHFSAKVTALDWSR--KYGLYSCTKDSRVYEWXIEDGSV 426
+G L I+ A+ + + A H SA+VT+ +++ +Y L SC KDS + W + G +
Sbjct: 319 DGSLRIWDGISAECVRPIIGA-HASAEVTSAIFTKDERYVL-SCGKDSCIKLWEVGSGRL 376
Query: 427 KQTY 438
+ Y
Sbjct: 377 VKQY 380
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
+S D + + +KD LK+WD T+ LKQ+
Sbjct: 435 WSADSRLLLSGSKDSTLKVWDIRTHKLKQD 464
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
+S D + + +KD LK+WD T LKQ+
Sbjct: 384 WSADSRLLLSGSKDSTLKVWDIRTRKLKQD 413
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FS DG Y +TI +DG L+++D
Sbjct: 198 FSPDGTYLATIGRDGYLRVFD 218
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FS DG Y +T+ +DG L+++D
Sbjct: 347 FSPDGAYLATVGRDGYLRVFD 367
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVS 163
F+E Y + D +K+ + N L+++ L P+C+ W T S
Sbjct: 414 FNEGSSYIEILDSDEEVKVVNDTGNALRRKPLVPAKLPIVPSCVAWRTRS 463
>03_05_0700 +
26920743-26920771,26920880-26920991,26921205-26921306,
26921391-26921503,26921858-26921927,26922348-26922425,
26922500-26922616,26922738-26922832,26923080-26923159,
26923405-26923532
Length = 307
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
F DG + + ++DG ++IWD T ++EY
Sbjct: 97 FHCDGNWMYSGSEDGTVRIWDLRTATCQREY 127
>01_06_0303 + 28324155-28325045,28326208-28326321
Length = 334
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
+ + S DG++ + + DG L++WD T V + +
Sbjct: 80 DVVLSSDGQFALSGSWDGELRLWDLSTGVTTRRF 113
>03_05_0525 + 25200207-25200580,25201061-25201751
Length = 354
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIW 73
SE G Y +++T DGRL IW
Sbjct: 154 SEKGVYLASLTIDGRLSIW 172
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIW 73
SE G Y +++T DGRL IW
Sbjct: 278 SEKGVYLASLTIDGRLSIW 296
>01_01_1069 -
8420454-8420670,8421272-8421447,8421556-8421738,
8421885-8421980,8422064-8422192,8422266-8422445,
8422524-8422634,8422714-8422869,8422983-8423078,
8423160-8423327,8423402-8423642,8423724-8423851,
8424042-8424134,8424214-8424309,8424431-8424523,
8424741-8424850,8424999-8425134,8425215-8425315,
8426029-8426152,8426237-8426411,8426523-8426681,
8427423-8427536,8427669-8427848,8428926-8429005
Length = 1113
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = +1
Query: 169 SFELKREPKQFKCEYKRK*VPMHSIRHYNGKLLIYSXSQ-AKIINVWVPAKHFSAKVTAL 345
SFE P C + ++ + +GK+ + ++ P K + + +
Sbjct: 467 SFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLYSA 526
Query: 346 DWSRKYGLYSC--TKDSRVY--EWXIEDGSVKQTYN 441
D +R L+SC +KD Y EW +GS+K+TY+
Sbjct: 527 DGTR---LFSCGTSKDGDSYLVEWNESEGSIKRTYS 559
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 414 FYVPLIDSTVLSTAVQTVFSTPIQGGHFSAKMFGGH 307
F++P+ID+T + + T T I H + + GH
Sbjct: 642 FFLPVIDTTQIGRIILTNLLTMITRSHKGGRSWNGH 677
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 414 FYVPLIDSTVLSTAVQTVFSTPIQGGHFSAKMFGGH 307
F++P+ID+T + + T T I H + + GH
Sbjct: 642 FFLPVIDTTQIGRIILTNLLTMITRSHKGGRSWNGH 677
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 414 FYVPLIDSTVLSTAVQTVFSTPIQGGHFSAKMFGGH 307
F++P+ID+T + + T T I H + + GH
Sbjct: 642 FFLPVIDTTQIGRIILTNLLTMITRSHKGGRSWNGH 677
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT-SPPTCLQWTTVSQS 169
FS DG+Y +T +DG +++W V++ E +L P+C+ +T S
Sbjct: 279 FSSDGQYLATGGEDGVVRVW----RVVEGERPNELDFAEDDPSCVFFTVNENS 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,229
Number of Sequences: 37544
Number of extensions: 254542
Number of successful extensions: 588
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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