Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31041.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 116 1e-26
10_08_0310 - 16669565-16669822,16670558-16670794 111 2e-25
01_06_1794 - 39919363-39920025 29 1.6
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.1
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 2.7
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 3.6
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 3.6
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 28 3.6
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 28 4.8
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 4.8
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 8.4
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 8.4
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 116 bits (278), Expect = 1e-26
Identities = 58/110 (52%), Positives = 70/110 (63%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRSAXISVXXMSSTPSAXKTSLRESK 344
TGRV+NVT A+GV +NK+V + R I V PS LR K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRK-RIHVRVEHVQPSRCTEELRLRK 109
Score = 63.7 bits (148), Expect = 8e-11
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +2
Query: 260 RIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KR ++RV HV+ S+C ++ R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEGPKPGFMVE 142
Query: 440 GTEKPVLLAPIPYEFV 487
G + PIPY+ V
Sbjct: 143 GATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 111 bits (268), Expect = 2e-25
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYR 272
TGRV+NVT A+GV +NK+V + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 66.1 bits (154), Expect = 1e-11
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +2
Query: 260 RIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KR ++RV HV+ S+C ++F R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVE 142
Query: 440 GTEKPVLLAPIPYEFV 487
G + PIPY+ V
Sbjct: 143 GATLET-VTPIPYDVV 157
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 335 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 472
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 122 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 223
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 114 YKVGDIVDIRGNGAVQKGMPHKVY 185
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 362 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 490
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 122 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 217
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 155 SSKGYATQSIPWKDRSRVQRDC--SCSRCDCQQACC 256
+S G + Q P + R + Q D SC RC C+++ C
Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKC 471
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 251 CCGRIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQP 409
C R + I V ++ KC +D++ E L K + GK+V + + P
Sbjct: 410 CISRQLWWGHRIPVWYIVGKKCEEDYIVARSAEEALAKAQEKYGKSVEIYQDP 462
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 369 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 476
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 338 VKENERLLKEAKAA--GKTVNLKRQPAPPKAAH-IVSGTEKPVLLAP 469
V+ +++ LK +A G N R P PP+A++ I G P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 69 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 233
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,639
Number of Sequences: 37544
Number of extensions: 267351
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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