Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31041.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 135 2e-32
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.70
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.6
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 4.9
SB_45816| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004) 27 6.5
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0) 27 6.5
SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34) 27 6.5
SB_17573| Best HMM Match : SspO (HMM E-Value=0.55) 27 6.5
SB_11323| Best HMM Match : SspO (HMM E-Value=0.85) 27 6.5
SB_3445| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) 27 6.5
SB_43264| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36) 27 6.5
SB_618| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 8.6
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24) 27 8.6
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026) 27 8.6
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 135 bits (327), Expect = 2e-32
Identities = 60/80 (75%), Positives = 70/80 (87%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 195 TGRVYNVTAHALGVIVNKRV 254
TGRVYNVT ALGV+VNK+V
Sbjct: 483 TGRVYNVTKRALGVVVNKQV 502
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.70
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 326 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 475
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 389 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 481
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 29 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 29 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 29 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 29 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 247
C+S + D+S VQ+DCS R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767
>SB_45816| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004)
Length = 377
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 296 DIYVKEYNNTLAKLLNRHSPNKTRTRVTRPVVPWY 330
>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
Length = 1311
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 319 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 353
>SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)
Length = 899
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 45 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 79
>SB_17573| Best HMM Match : SspO (HMM E-Value=0.55)
Length = 223
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 69 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 103
>SB_11323| Best HMM Match : SspO (HMM E-Value=0.85)
Length = 436
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 288 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 322
>SB_3445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 134 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 168
>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
Length = 654
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -1
Query: 376 SLGFLQ*PLILFDSLKEVLXALGVLDMXNTDIXAL--RYNPSATRLLTITPRA*AVTLYT 203
S+ F + I D+LK L + + TD+ + +YN + + LL + T+
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286
Query: 202 RPVFPWY 182
RP PW+
Sbjct: 287 RPRLPWF 293
>SB_43264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 239 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 273
>SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 333 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 367
>SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 933
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 785 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 819
>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
Length = 979
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 386 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 420
>SB_618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 286 DIXALRYNPSATRLLTITPRA*AVTLYTRPVFPWY 182
DI YN + +LL T TRPV PWY
Sbjct: 10 DIYVKEYNNTLAKLLNRHAPNKTRTRVTRPVVPWY 44
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 128 HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDC 241
HC RH ++ + AT+ +PW KD S R C + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315
>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
Length = 729
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +2
Query: 290 VXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 454
V H ++ F+ ++++ +A+ G+ ++L +P AH++ EKP
Sbjct: 286 VMHKANALASGSFMATTPQSKQTKSKAQDGGRGLSLAGEPYSSHQAHLIQVFEKP 340
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 297 MSSTPSAXKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 428
+S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 634 LSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
Length = 528
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 188 WKDRSRVQRDCSCSRCDCQQACCG--RIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLL 361
WK++ ++ + C Q+ + +P + + ++ ++ SKC Q+ L KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,878
Number of Sequences: 59808
Number of extensions: 312201
Number of successful extensions: 964
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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