Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31041.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 120 8e-28
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.087
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.087
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.087
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 30 0.81
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 25 1.7
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 1.9
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 1.9
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 29 2.5
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 29 2.5
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 3.3
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 3.3
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 27 5.7
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 27 5.7
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z81035-1|CAB02735.1| 221|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z66523-1|CAA91411.1| 361|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z49966-3|CAA90241.1| 361|Caenorhabditis elegans Hypothetical pr... 27 10.0
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 120 bits (288), Expect = 8e-28
Identities = 60/104 (57%), Positives = 71/104 (68%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRSAXISVXXMSSTPSAXKT 326
TGR++NVT A+G+IVNKRV G I++ PS +T
Sbjct: 61 TGRIFNVTRGAVGIIVNKRV-RGNILPKRINIRIEHIKPSKCRT 103
Score = 82.6 bits (195), Expect = 1e-16
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Frame = +2
Query: 257 GRIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH- 430
G I+PKR NIR+ H+K SKC DFL RVK N+ K AK+AG+ V LKR P P+ AH
Sbjct: 82 GNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHT 141
Query: 431 IVSGTEKPVLLAPIPYEFVA 490
+ + +P LLAP+ +E VA
Sbjct: 142 VTTQNNEPELLAPLRFEIVA 161
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.087
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.087
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.087
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 30.3 bits (65), Expect = 0.81
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 116 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 253
Q RHC Q C S Y W+ RSRV +C+ + Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 392 NLKRQPAPPKAAHIVSGTE 448
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 25.0 bits (52), Expect(2) = 1.7
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +2
Query: 119 SWRHCRHQRQWCSSKG---YATQSIPWKDRSRVQRDCSCSRCDCQQACCGRIIP 271
SW+ Q + C ++G + S R R+Q DC CC ++P
Sbjct: 14 SWKEVHGQLRLCEAEGSCRHCADSRYSYYRCRMQDDCFIGEICDNGFCCPNVLP 67
Score = 22.6 bits (46), Expect(2) = 1.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 386 TVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 481
T +L+R+P PK ++ T P P P E
Sbjct: 68 TFSLQREPTSPKPKRPLNITSDPPADEPCPDE 99
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 143 RQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
R S+ + SI SRV+R C C C CCG
Sbjct: 37 RSSASTTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 75
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 457 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 371
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 266 IPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 445
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 446 EKPVLLAPIPYE 481
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 266 IPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 445
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 446 EKPVLLAPIPYE 481
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 457 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 371
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 155 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
S+ + SI SRV+R C C C CCG
Sbjct: 40 STTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 74
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 155 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
S+ + SI SRV+R C C C CCG
Sbjct: 42 STTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 76
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 200 SRVQRDCSCSRCDCQQACCG 259
SRV+R C C C CCG
Sbjct: 55 SRVKRQGGCGCCGCGCGCCG 74
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 224 CSRCDCQQACCGRIIPKRXNIRVXHVKHSKCXQDF--LKRVKENE 352
C R CQ+ CGR + +V H C + F LK++ ENE
Sbjct: 147 CPRIKCQRPGCGREFCFKCR-KVWHEGTRTCSKTFEQLKKITENE 190
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 352 LILFDSLKEVLXALGVL 302
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 352 LILFDSLKEVLXALGVL 302
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 341 KENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLAPI 472
K+N++ K++++ T ++ PAPP+ +V EKPV AP+
Sbjct: 378 KKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--APV 420
>Z81035-1|CAB02735.1| 221|Caenorhabditis elegans Hypothetical
protein C15H11.1 protein.
Length = 221
Score = 26.6 bits (56), Expect = 10.0
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = +2
Query: 35 PPR--HQGLVRSQVPHTWNYSALHVHESV-----QSWRHCRHQRQWCSSKGYATQSIPWK 193
PP+ H+ V YSAL +V QS +H R +RQ S++ +T++I
Sbjct: 110 PPQGEHKLRVTPSTEEQMEYSALPPTPTVASSIKQSTKHKRTERQLQSTQKMSTENITSV 169
Query: 194 DRSRVQRDCSCSRCD 238
S Q++C D
Sbjct: 170 QASTTQQECPTQEDD 184
>Z66523-1|CAA91411.1| 361|Caenorhabditis elegans Hypothetical
protein M05D6.1 protein.
Length = 361
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +2
Query: 38 PRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 217
PR++ + R V Y +L+VH + RH + AT ++PWK + + +
Sbjct: 183 PRNKSMFRGTV----RYCSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKKETS 238
Query: 218 CSCSRCDCQQACCG 259
+ Q C G
Sbjct: 239 ALKEKTTDVQLCKG 252
>Z49966-3|CAA90241.1| 361|Caenorhabditis elegans Hypothetical
protein F35C11.3 protein.
Length = 361
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +2
Query: 38 PRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 217
PR++ + R V Y +L+VH + RH + AT ++PWK + + +
Sbjct: 183 PRNKSMFRGTV----RYCSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKKETS 238
Query: 218 CSCSRCDCQQACCG 259
+ Q C G
Sbjct: 239 ALKEKTTDVQLCKG 252
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,865,311
Number of Sequences: 27780
Number of extensions: 213297
Number of successful extensions: 837
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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