Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31041.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 116 1e-26
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 116 1e-26
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 114 4e-26
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 114 4e-26
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 32 0.25
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 29 1.7
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 1.7
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 3.0
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 28 4.0
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 4.0
At1g54926.1 68414.m06272 hypothetical protein 28 4.0
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 4.0
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 5.3
At1g04680.1 68414.m00465 pectate lyase family protein similar to... 27 5.3
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 7.0
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)... 27 7.0
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.0
At3g45880.1 68416.m04965 hypothetical protein 27 7.0
At1g76990.3 68414.m08966 ACT domain containing protein low simil... 27 7.0
At1g76990.2 68414.m08965 ACT domain containing protein low simil... 27 7.0
At1g76990.1 68414.m08964 ACT domain containing protein low simil... 27 7.0
At5g56080.1 68418.m06997 nicotianamine synthase, putative simila... 27 9.3
At3g52020.1 68416.m05706 serine carboxypeptidase S10 family prot... 27 9.3
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 116 bits (278), Expect = 1e-26
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-AXISVXXMSSTPSAXKTSLRESK 344
TGR++NVT A+GV VNK++ + R + V + + A + LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 69.7 bits (163), Expect = 1e-12
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2
Query: 260 RIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KR ++RV HV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 440 GTEKPVLLAPIPYEFV 487
G + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 116 bits (278), Expect = 1e-26
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-AXISVXXMSSTPSAXKTSLRESK 344
TGR++NVT A+GV VNK++ + R + V + + A + LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 69.7 bits (163), Expect = 1e-12
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2
Query: 260 RIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KR ++RV HV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 440 GTEKPVLLAPIPYEFV 487
G + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 114 bits (274), Expect = 4e-26
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-AXISVXXMSSTPSAXKTSLRESK 344
TGR++NVT A+GV VNK++ + R + V + + A + LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 70.5 bits (165), Expect = 6e-13
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = +2
Query: 260 RIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KR ++RV HV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 440 GTEKPVLLAPIPYEFV 487
G + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 114 bits (274), Expect = 4e-26
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-AXISVXXMSSTPSAXKTSLRESK 344
TGR++NVT A+GV VNK++ + R + V + + A + LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 70.5 bits (165), Expect = 6e-13
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = +2
Query: 260 RIIPKRXNIRVXHVKHSKCXQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KR ++RV HV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 440 GTEKPVLLAPIPYEFV 487
G + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 31.9 bits (69), Expect = 0.25
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 165 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVAEGLYRSAXISVXXMSSTPSAXKTSLRESK 344
G P K Y+G GR+ AHAL NK + L+R ++ P A + S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQA--LAWKPCADQRSWKPSD 239
Query: 345 RMRGY 359
GY
Sbjct: 240 GKNGY 244
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -3
Query: 248 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERN 87
L N S V + + FVW LLN SDV+ V +H R ERN
Sbjct: 346 LTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 140 DVYNVSNFVHFHVRGERNSSM 78
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 244
C +GY+ ++ KDR R+ D C+ D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 194 DRSRVQR-DC-SCSR-CDCQQACCGRIIPKRXNIRVXHVKH 307
DRS V R C SCS+ C C ++C R K I++ +H
Sbjct: 295 DRSCVCRVQCISCSKGCSCPESCGNRPFRKEKKIKIVKTEH 335
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 300 SSTPSAXKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 458
+STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 6 NSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 233 CDCQQACCGRIIPKRXNIRVXHVKHSK 313
CD + C R+ PK +I H KH K
Sbjct: 59 CDLSEGCKNRMTPKAFHIISQHPKHHK 85
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 114 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 245
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 74 HTWNYSALHVHESVQSWRHCRHQRQWCS 157
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At1g04680.1 68414.m00465 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 431
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 191 SMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNS-SMCAEPASEQVPGAAAVTLGVRH 15
S +F W T+ +D +S F HV + NS S CA+ + V G+ A+T+ H
Sbjct: 216 SETHFGWRTM------ADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNH 269
Query: 14 L 12
L
Sbjct: 270 L 270
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 7.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 119 SWRHCRHQRQWCSS 160
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
identical to telomerase reverse transcriptase
[Arabidopsis thaliana] GI:5880683
Length = 1123
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 188 WKDRSRVQR--DCSCSRCDCQQACCGRIIPKRXNIRVXHVKHSKCXQDFLKRV 340
W R V+R + S CDCQ C R + + + S + LKRV
Sbjct: 96 WSQREIVERIIEMMQSGCDCQNVICARYDKYDQSSPILELLTSSSWEFLLKRV 148
>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 27.1 bits (57), Expect = 7.0
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = -3
Query: 248 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAE 69
L N S V A + + F W +LN SDV+ V ++ R ERN A
Sbjct: 351 LTHNGWSSTVESVCEAVPMICLPFRWDQMLNARFVSDVWMVG--INLEDRVERNEIEGAI 408
Query: 68 PASEQVPGAAAVTLGVRHLR 9
P A+ + HL+
Sbjct: 409 RRLLVEPEGEAIRERIEHLK 428
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -1
Query: 409 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLXALGVLDMXNTDIXALRYNPSATRL 245
W +Q D FLQ L SL VL D ++D ++ PSAT L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At1g76990.3 68414.m08966 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 244
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.2 68414.m08965 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 244
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.1 68414.m08964 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 244
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At5g56080.1 68418.m06997 nicotianamine synthase, putative similar
to nicotianamine synthase [Lycopersicon
esculentum][GI:4753801], nicotianamine synthase 2
[Hordeum vulgare][GI:4894912]
Length = 320
Score = 26.6 bits (56), Expect = 9.3
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = -3
Query: 263 SFRNTLVDNHTESMSSHVVHATCLSMVYFVWHT--LLNCTIASDVYNVSNFVHFHVRGER 90
+F N +D+H +++S++V ++HT +LN D Y+V F+ V ++
Sbjct: 151 TFHNFDIDSHANTLASNLVSRDSDLSKRMIFHTTDVLNAKEGLDQYDVV-FLAALVGMDK 209
Query: 89 NSSMCAEPASEQ--VPGAAAVTLGVRHLRA 6
S + A E+ PGA + LRA
Sbjct: 210 ESKVKAIEHLEKHMAPGAVVMLRSAHGLRA 239
>At3g52020.1 68416.m05706 serine carboxypeptidase S10 family protein
similar to SP|P52711 Serine carboxypeptidase II-3
precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
profile PF0450 serine carboxypeptidase
Length = 501
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 477 YGIGASKTGFSVPLTMWAALGGAGC 403
Y + A+KT S+PL +W GG GC
Sbjct: 111 YFVEATKTKKSLPLVLWLN-GGPGC 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,361,991
Number of Sequences: 28952
Number of extensions: 200807
Number of successful extensions: 670
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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