Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31039.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 146 2e-35
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 146 2e-35
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 30 1.6
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 3.7
09_06_0103 + 20873310-20873382,20873530-20873735 29 3.7
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 4.9
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 6.5
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 8.6
05_01_0127 - 863755-865182 27 8.6
02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532 27 8.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 146 bits (353), Expect = 2e-35
Identities = 68/115 (59%), Positives = 83/115 (72%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALXNNXLPTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRL 597
HQPI E++ NIP IA + P + VDI IP N K SIG ++WLLAR VL++
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQM 189
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +2
Query: 65 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 245 IENP 256
IENP
Sbjct: 72 IENP 75
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 146 bits (353), Expect = 2e-35
Identities = 68/115 (59%), Positives = 84/115 (73%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALXNNXLPTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRL 597
HQPI E++ NIP IA + P + VDI IP N K +SIG ++WLLAR VL++
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQM 189
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/75 (58%), Positives = 55/75 (73%)
Frame = +2
Query: 32 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 211
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 212 KLVLAARAVVAIENP 256
KL LAAR +VAIENP
Sbjct: 61 KLQLAARVIVAIENP 75
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 208 GKTCSGCSCCRSHREPA-DVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 384
G+ SGC CR D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 385 AFREPRLLIVLD 420
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 132 TFSAPRWVVAASILVTSSSLRASTSNP 52
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 309 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 416
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 139 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 246
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 175 WYPCDQLASYLGKTCSGCSCCRSHREP 255
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 129 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 16
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>05_01_0127 - 863755-865182
Length = 475
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 407 KRRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFSTAR*P 288
KRR +A ++ + PG RP G P AA+ A P
Sbjct: 209 KRRNGEHACEVYTLGKPGGWRPCAGRVPASAASILPAMPP 248
>02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532
Length = 119
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -1
Query: 268 RTHQRVLDGY---DSTSSQNKFFPGTTQVDHMGTISTSFVDIGL 146
R QRV +G + ++++ + P TT +GTIS+ VD+GL
Sbjct: 65 RARQRVGEGVRLDNGLANRDWYLPSTTHA--VGTISSGVVDVGL 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,423,007
Number of Sequences: 37544
Number of extensions: 419843
Number of successful extensions: 1087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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