Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31039.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               195   2e-50
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.53 
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   2.2  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.2  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   2.2  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 27   8.7  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   8.7  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 27   8.7  
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                27   8.7  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  195 bits (476), Expect = 2e-50
 Identities = 90/115 (78%), Positives = 100/115 (86%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           PADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP  D
Sbjct: 71  PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130

Query: 433 HQPITEASYVNIPVIALXNNXLPTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRL 597
           HQP+TEASYVNIPVIA  N   P + VD+AIPCN K  HSIGLM+WLLAREVLR+
Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRM 185



 Score =  109 bits (262), Expect = 2e-24
 Identities = 48/71 (67%), Positives = 59/71 (83%)
 Frame = +2

Query: 44  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 223
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 224 AARAVVAIENP 256
           AAR +V IENP
Sbjct: 61  AARIIVTIENP 71


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 489  VXQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 325
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 489 VXQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 331
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
 Frame = +1

Query: 274  SSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAA----FREPRLLIVLDPAQDHQP 441
            S +  GQ  ++K++   G   +A  F   + T ++  A    F   +L  +   AQDH  
Sbjct: 1179 SDKDIGQNGLIKYSISNGN--LAAMFDVESATGRLIVAKSLDFETTQLYELTITAQDHGL 1236

Query: 442  ITEASYVNIPVIALXNN----XLPTKIVDIAIPCNTKSSHSIG 558
            I  +S VN+ V  L  N      PT+ V + +  N  +   +G
Sbjct: 1237 IPLSSTVNVTVNVLDVNDNAPLFPTQPVTLTVRENVNTGFPVG 1279


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 209 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 301
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 489 VXQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 331
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 209 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 301
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 396 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQQQXPH*DCGHC 521
           TSSLD + PC+  S H+   +  + C C+   Q     C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 154 CLQTTC*WYPCD-QLASYLGKTCSGCSC 234
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 270  HLITALRSACCTEVCRAHRCYAYCGTF 350
            + + + R +  T++ R HRC  YC  F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 413 TIKRRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFS 303
           T+++RG ++A + W       +RP+     VC+ N S
Sbjct: 122 TMEKRGRKSATYFWPSSTSYERRPSFFADHVCSVNCS 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,978,616
Number of Sequences: 59808
Number of extensions: 472109
Number of successful extensions: 1237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)