Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31039.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 151 5e-37
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 146 1e-35
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 146 1e-35
At2g22340.1 68415.m02651 hypothetical protein 33 0.19
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.3
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 29 2.4
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 28 4.1
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 27 7.2
At4g26490.1 68417.m03812 expressed protein 27 9.5
At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) / cyclin-d... 27 9.5
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 151 bits (365), Expect = 5e-37
Identities = 69/115 (60%), Positives = 84/115 (73%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALXNNXLPTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRL 597
HQPI E + NIP+IA + P + VDI IP N K HSIG ++WLLAR VL++
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQM 189
Score = 85.4 bits (202), Expect = 3e-17
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +2
Query: 65 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 245 IENP 256
IENP
Sbjct: 72 IENP 75
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 146 bits (354), Expect = 1e-35
Identities = 68/115 (59%), Positives = 81/115 (70%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 433 HQPITEASYVNIPVIALXNNXLPTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRL 597
HQPI E + NIP IA + P VDI IP N K HSIG ++WLLAR VL++
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQM 190
Score = 85.0 bits (201), Expect = 3e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +2
Query: 77 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 146 bits (354), Expect = 1e-35
Identities = 68/115 (59%), Positives = 81/115 (70%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 433 HQPITEASYVNIPVIALXNNXLPTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRL 597
HQPI E + NIP IA + P VDI IP N K HSIG ++WLLAR VL++
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQM 190
Score = 85.0 bits (201), Expect = 3e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +2
Query: 77 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 115 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 234
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 352 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 453
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +2
Query: 35 SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 214
S+++S +++LA ++ + ++A T L E ++ + ++ GT + + E
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702
Query: 215 LVLAARAVVAIENPLMCSSSHHGPSV 292
L+ AR + + L CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 397 PRLLIVLDPAQDHQPITEASYVNIPVIALXNNXLPTKIVD-IAIPCNTKSS 546
P ++V D + I EAS + IPV+A+ + +P + + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 552 RVGRLGVAWDSNVHNLSGEXVVXQSNHRNVDI*SFSNGLMVLCRVQY 412
R GR+G WD+NVH + ++ S D+ S ++ +C Y
Sbjct: 107 RSGRIGRCWDANVHRATCSSLLKNSKFTE-DLMFTSPHILKVCPYTY 152
>At4g26490.1 68417.m03812 expressed protein
Length = 200
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 401 RGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFST 300
R SR + WIW V RP I V + AN T
Sbjct: 29 RSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62
>At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) /
cyclin-dependent kinase inhibitor 5 (ICK5) identical to
cyclin-dependent kinase inhibitor 5 (krp5) [Arabidopsis
thaliana] GI:14422293
Length = 189
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 375 LVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DDEHIS 256
L+ C+T R S+G KL+ T TE D+E IS
Sbjct: 79 LIPSVNQCQTKNPRASSGPAKKLEPDTTTEEACGDNERIS 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,284,914
Number of Sequences: 28952
Number of extensions: 315235
Number of successful extensions: 704
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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