Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31037.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    58   7e-10
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    50   1e-07
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    49   2e-07
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    48   4e-07
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    46   2e-06
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    43   2e-05
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    35   0.005
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    33   0.016
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   3.3  

>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 57.6 bits (133), Expect = 7e-10
 Identities = 30/38 (78%), Positives = 31/38 (81%)
 Frame = +3

Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
           EHPA KVLV LAQ QD EV DGTTSVVIIAAELL  A+
Sbjct: 73  EHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRAN 110



 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           VKSSL P GLDKML          NDGATIL +L+V
Sbjct: 37  VKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDV 72


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 25/42 (59%), Positives = 28/42 (66%)
 Frame = +3

Query: 258 HPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NADVXXXD 383
           HPAAK LV +A+ QD EV DGTTSVV+ A ELL  A     D
Sbjct: 77  HPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVED 118



 Score = 34.3 bits (75), Expect = 0.007
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           ++++L P G DK++          NDGATI+K+L++
Sbjct: 40  IRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDI 75


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 23/45 (51%), Positives = 34/45 (75%)
 Frame = +3

Query: 237 IKNAGSEHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NADV 371
           +K+   ++ AAKVLV ++++QD EV DGTTSV + AAELL  A++
Sbjct: 67  LKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEI 111



 Score = 31.1 bits (67), Expect = 0.066
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 148 VKSSLXPXGLDKML-XXXXXXXXXXNDGATILKML 249
           VKS+L P G+DK+L           NDGATILK +
Sbjct: 36  VKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSI 70


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 48.4 bits (110), Expect = 4e-07
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +3

Query: 258 HPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
           HPAAK ++ LA+ QD EV DGTTSV+I+A E+L
Sbjct: 72  HPAAKSMIELARTQDEEVGDGTTSVIILAGEIL 104



 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEVSILLPKS 276
           +++ L P  + KML          NDG  IL+ +EV+    KS
Sbjct: 35  IRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKS 77


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = +3

Query: 237 IKNAGSEHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
           +K+    HPAAK+LV L+  QD E  DGTTSVVI+A  +L
Sbjct: 65  LKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSML 104



 Score = 36.7 bits (81), Expect = 0.001
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           +++SL P G+DKM+          NDGATILK L V
Sbjct: 35  IRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = +3

Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
           EH  AK+LV L++ QD E+ DGTT VV++A  LL  A+
Sbjct: 86  EHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAE 123



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEVSILLPK 273
           V++SL P GLDK+L          NDGATIL  +EV   + K
Sbjct: 50  VRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAK 91


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 34.7 bits (76), Expect = 0.005
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 258 HPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
           HPAAK++V   Q Q+ E+ D    VV+   ELL  A+
Sbjct: 79  HPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAE 115



 Score = 27.5 bits (58), Expect = 0.81
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 151 KSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           ++SL P G +K++          ND ATI++ LEV
Sbjct: 43  RTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEV 77


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 33.1 bits (72), Expect = 0.016
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NADV 371
           ++P A  +   A  QD    DGTTSV ++  ELL  A++
Sbjct: 68  QNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAEL 106



 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           +KS+L P G  KML           DG  +L  +++
Sbjct: 32  LKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQI 67


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 126 CPLHFVFSXGLRRILSLLQTK 64
           CP+H +FS  L+ +++ L  K
Sbjct: 259 CPIHRIFSGSLKNVVTCLDCK 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,544
Number of Sequences: 5004
Number of extensions: 16762
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)