Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31037.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 60 6e-10
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 52 2e-07
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 52 2e-07
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 50 9e-07
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 47 6e-06
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 47 6e-06
10_08_0620 - 19321612-19323237 37 0.007
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 37 0.007
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 36 0.009
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 36 0.009
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 60.1 bits (139), Expect = 6e-10
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3
Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
EHPAAKVLV LA+LQD EV DGTTSVVIIAAELL
Sbjct: 25 EHPAAKVLVELAELQDREVGDGTTSVVIIAAELL 58
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 220 NDGATILKMLEV 255
NDGATIL+MLEV
Sbjct: 13 NDGATILRMLEV 24
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +3
Query: 237 IKNAGSEHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
+K+ ++PAAKVLV ++++QD EV DGTTSVV++A ELL A+
Sbjct: 65 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAE 108
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 148 VKSSLXPXGLDKMLXXXXXXXXXX--NDGATILKMLEV 255
VK++L P G+DK+L NDGATILK L +
Sbjct: 33 VKTTLGPKGMDKILQSTGRGRSVTVTNDGATILKSLHI 70
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +3
Query: 237 IKNAGSEHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
+K+ ++PAAKVLV ++++QD EV DGTTSVV++A ELL A+
Sbjct: 64 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAE 107
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 148 VKSSLXPXGLDKMLXXXXXXXXXX--NDGATILKMLEV 255
VK++L P G+DK+L NDGATILK L +
Sbjct: 32 VKTTLGPKGMDKILQSTGRGRSVTVTNDGATILKSLHI 69
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 49.6 bits (113), Expect = 9e-07
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +3
Query: 258 HPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
HPAAK+LV +A+ QD EV DGTT+VV++AAE L
Sbjct: 76 HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFL 108
Score = 34.7 bits (76), Expect = 0.027
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
V+++L P G+DK++ NDGATI+++L++
Sbjct: 39 VRTTLGPRGMDKLIHDDKGGTTISNDGATIMRLLDI 74
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 46.8 bits (106), Expect = 6e-06
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 258 HPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
HPAAK ++ L++ QD EV DGTTSV+++A E+L
Sbjct: 74 HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEML 106
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 46.8 bits (106), Expect = 6e-06
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 258 HPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
HPAAK ++ L++ QD EV DGTTSV+++A E+L
Sbjct: 74 HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEML 106
>10_08_0620 - 19321612-19323237
Length = 541
Score = 36.7 bits (81), Expect = 0.007
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 261 PAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
PAA++L L++ QD DGTT+VV++A LL
Sbjct: 84 PAARMLADLSRSQDAAAGDGTTTVVVLAGSLL 115
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 36.7 bits (81), Expect = 0.007
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 261 PAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
PAA++L L++ QD DGTT+VV++A LL
Sbjct: 80 PAARMLAELSRSQDAAAGDGTTTVVVLAGSLL 111
Score = 33.9 bits (74), Expect = 0.048
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEVSILLP 270
V++SL P G+DKM+ NDGATIL +S+L P
Sbjct: 42 VRTSLGPRGMDKMISSGEQEVIITNDGATILS--RMSLLQP 80
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 36.3 bits (80), Expect = 0.009
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEVSILLPK 273
+++SL P G+DKML NDGATIL+ ++V + K
Sbjct: 44 LRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAK 85
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 36.3 bits (80), Expect = 0.009
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
+HPAAK+LV + Q E+ DG + A ELL A+
Sbjct: 74 QHPAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAE 111
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 151 KSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
++SL P G++KM+ ND ATI+ LEV
Sbjct: 39 RTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEV 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,796,521
Number of Sequences: 37544
Number of extensions: 119297
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -