Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31037.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   52   1e-07
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   2e-05
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   2e-05
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   4e-04
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  39   0.002
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      36   0.009
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              34   0.049
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              31   0.46 
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  

>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 23/44 (52%), Positives = 35/44 (79%)
 Frame = +3

Query: 237 IKNAGSEHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
           +K+ G ++PAAK+LV L+++QD EV DGTTSV ++ +ELL  A+
Sbjct: 68  LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAE 111



 Score = 30.7 bits (66), Expect = 0.46
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 148 VKSSLXPXGLDKML--XXXXXXXXXXNDGATILKMLEV 255
           VKS+L P G+DK+L            NDGATILK + +
Sbjct: 36  VKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGI 73


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = +3

Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
           +HPAAK ++ +++ QD EV DGTTSV+I+A E +
Sbjct: 15  KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFM 48


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = +3

Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
           +HPAAK ++ +++ QD EV DGTTSV+I+A E +
Sbjct: 212 KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFM 245


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 231 HNIKNAGSEHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NADV 371
           + ++N+  +HP A ++  +A  QD    DGTTS V+I  ELL  AD+
Sbjct: 164 NGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADL 210


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEVSILLPK 273
           +K+SL P G+DKM+          NDGATIL M+EV   + K
Sbjct: 46  LKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAK 87


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +3

Query: 285 LAQLQDXEVXDGTTSVVIIAAELL*NAD 368
           L+++QD EV DGTTSV ++A+ELL  A+
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAE 29


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 33.9 bits (74), Expect = 0.049
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           V+++L P G+DK++          NDGATI+ +L++
Sbjct: 671 VRTTLGPRGMDKLIVDGRGKATISNDGATIINLLDI 706



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 258 HPAAKVLVXLAQLQDXE 308
           HPAAK LV +A+ QD E
Sbjct: 708 HPAAKTLVDIAKSQDAE 724


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATI 237
           +++SL P G+DKM+          NDGATI
Sbjct: 40  IRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 58  AIVDIFYCIFNTKFTL 11
           A+ DIF C+FN  FTL
Sbjct: 85  AVCDIFVCVFNIIFTL 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,315
Number of Sequences: 59808
Number of extensions: 141674
Number of successful extensions: 273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)