Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31037.Seq
         (399 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    24   2.4  
AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription fact...    22   9.5  

>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 116 ILCSXWVSAGSCPCYRQRCSYSRHFLLYF*HKIHF 12
           ++C  +     CP  R R +Y+R   L    + HF
Sbjct: 125 VVCGDFAGPNGCPRRRGRQTYTRFQTLELEKEFHF 159


>AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription
          factor Deformed protein.
          Length = 59

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 71 RQRCSYSRHFLLYF*HKIHF 12
          RQR +Y+RH +L    + H+
Sbjct: 3  RQRTAYTRHQILELEKEFHY 22


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 313,852
Number of Sequences: 2352
Number of extensions: 5122
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)