Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31037.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP...    60   5e-10
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P...    52   2e-07
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P...    50   8e-07
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P...    47   5e-06
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    40   6e-04
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P...    40   8e-04
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    38   0.003
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P...    27   4.6  
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    27   4.6  

>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
           TCP-1-alpha / chaperonin (CCT1) identical to
           SWISS-PROT:P28769- T-complex protein 1, alpha subunit
           (TCP-1-alpha) [Arabidopsis thaliana]
          Length = 545

 Score = 60.1 bits (139), Expect = 5e-10
 Identities = 30/38 (78%), Positives = 33/38 (86%)
 Frame = +3

Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
           EHPAAKVLV LA+LQD EV DGTTSVVI+AAELL  A+
Sbjct: 71  EHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRAN 108



 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 22/36 (61%), Positives = 24/36 (66%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           VK+SL P GLDKML          NDGATIL+MLEV
Sbjct: 35  VKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEV 70


>At5g20890.1 68418.m02481 chaperonin, putative similar to
           SWISS-PROT:P78371- T-complex protein 1, beta subunit
           (TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 527

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 24/44 (54%), Positives = 35/44 (79%)
 Frame = +3

Query: 237 IKNAGSEHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
           +K+   ++PAAKVLV ++++QD EV DGTTSVV++A ELL  A+
Sbjct: 66  LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAE 109



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 148 VKSSLXPXGLDKML--XXXXXXXXXXNDGATILKMLEV 255
           VKS+L P G+DK+L            NDGATILK L +
Sbjct: 34  VKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSLHI 71


>At3g11830.1 68416.m01450 chaperonin, putative similar to
           SWISS-PROT:P80313 T-complex protein 1, eta subunit
           (TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 557

 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 22/33 (66%), Positives = 28/33 (84%)
 Frame = +3

Query: 258 HPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
           HPAAK+LV +A+ QD EV DGTT+VV++AAE L
Sbjct: 76  HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFL 108



 Score = 35.9 bits (79), Expect = 0.010
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           V+++L P G+DK++          NDGATI+K+L++
Sbjct: 39  VRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDI 74


>At5g26360.1 68418.m03151 chaperonin, putative similar to
           SWISS-PROT:P50143- T-complex protein 1, gamma subunit
           (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 555

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +3

Query: 258 HPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
           HPAAK ++ L++ QD EV DGTTSV+++A E+L
Sbjct: 72  HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEML 104


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +3

Query: 261 PAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL 356
           PAAK+LV L++ QD    DGTT+VV+IA  LL
Sbjct: 82  PAAKMLVELSKSQDSAAGDGTTTVVVIAGALL 113



 Score = 36.7 bits (81), Expect = 0.006
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           V++SL P G+DKM+          NDGATIL  +EV
Sbjct: 44  VRTSLGPKGMDKMISTANGEVIITNDGATILNKMEV 79


>At3g03960.1 68416.m00415 chaperonin, putative similar to
           SWISS-PROT:P42932- T-complex protein 1, theta subunit
           (TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 549

 Score = 39.5 bits (88), Expect = 8e-04
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +3

Query: 255 EHPAAKVLVXLAQLQDXEVXDGTTSVVIIAAELL*NAD 368
           +HPAAK+LV  A+ Q  E+ DG    +  A ELL NA+
Sbjct: 79  QHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAE 116



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 151 KSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           ++SL P G++KM+          ND ATI+  LE+
Sbjct: 44  RTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEI 78


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEVSILLPK 273
           ++SSL P G+DKML          NDGATIL+ ++V   + K
Sbjct: 44  LRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAK 85


>At5g16070.1 68418.m01878 chaperonin, putative similar to
           SWISS-PROT:P80317 T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           +KS+L P G  KML           DG T+LK +++
Sbjct: 33  LKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQI 68


>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 VKSSLXPXGLDKMLXXXXXXXXXXNDGATILKMLEV 255
           +KS+L P G  KML           DG T+LK +++
Sbjct: 33  LKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQI 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,171,795
Number of Sequences: 28952
Number of extensions: 91905
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)