Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31036.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    34   0.016
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.45 
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   4.2  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   5.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.7  

>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +2

Query: 263 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGH 391
           +PL +    + +++++  PEF+  ++P++DW  L      +G+
Sbjct: 23  FPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQLGN 65


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 311 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRS 412
           F  +FI  V+ +++WE+L +     G  +GL R+
Sbjct: 100 FQEQFIENVVKEINWEILAILISLSGIENGLVRN 133


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 311 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLP 406
           F+PE  +  +  LDW   W  A S G    LP
Sbjct: 577 FSPEVRNGFLKTLDWLSQWACARSYGLGTRLP 608


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 462 YELSSKTLRF---HHTYFLKDLGRPSLWPMLSAATHNTSQSSFGITRLINSGLKSTSLTL 292
           Y++S   L F   H   F+K +   SL P+++A T   + S+        + + STS+ +
Sbjct: 227 YQISQTALLFLINHQGSFIKTIPLSSLPPLVAAPTSPNTSSTLITQSAAPTPIASTSIRI 286

Query: 291 MS 286
            S
Sbjct: 287 NS 288


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 121 DYWHFFVEFS*NIFVIMYFTCIIRYLRLC 35
           D WH F  F   IF+ + +T ++     C
Sbjct: 685 DPWHMFTSFVQYIFLSIMYTNVLNVYAFC 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,507
Number of Sequences: 5004
Number of extensions: 40796
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)