Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31036.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1314 - 25721137-25721538                                         49   3e-06
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76...    29   2.4  
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    29   3.2  
07_03_0064 + 12995669-12995904,12996299-12996533,12998223-129983...    29   3.2  
01_06_0456 + 29521282-29522064                                         28   5.6  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    27   7.5  
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    27   9.9  

>07_03_1314 - 25721137-25721538
          Length = 133

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +2

Query: 254 LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRS 412
           +TGYPL +       KE + NPEF+  ++PK+DW  L  A  ++G  + LP +
Sbjct: 17  VTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQALGLPELLPEA 69


>10_01_0053 -
           767131-767962,768517-769037,769384-769601,769720-769825,
           769958-770017
          Length = 578

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 325 KFRIKIDFFNFNVCRVNCKRIASQTPFKHFEVSILWVISFIIIFVLCNF 179
           + R K  FFN+    +N   + + T     + ++ W ISF+I+ V+  F
Sbjct: 190 ELRRKGSFFNWYTFMINSGSLLASTVLVWLQDNVGWGISFVIVVVVMAF 238


>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 353 WEVLWVAADSIGHSDGLP 406
           W++ WVA  +IGHS+ LP
Sbjct: 576 WQLWWVALRAIGHSECLP 593


>07_03_0064 +
           12995669-12995904,12996299-12996533,12998223-12998384,
           12999446-12999566,13000095-13001608
          Length = 755

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 519 LPDSDXSSVPLQLPPLTRLYELSSKTLRFHHTYFLKDLGRPSLWPMLSAATHN 361
           LP +    V L  PP+ RL+   +  LR  H + L++L  P     L+AA H+
Sbjct: 319 LPLTFFDLVFLDFPPVQRLFFYDNADLRDAHDFLLREL--PLFRESLAAALHH 369


>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 537 LEIGNCLPDSDXSSVPLQLPPLTRLYELSSKTLRFHHTYF 418
           + +G  LP    +S P Q PP   +   +  TLR HH  F
Sbjct: 140 VHLGGQLPSDGGASSPWQPPPHFCIISPAMATLRRHHQVF 179


>11_01_0185 +
           1455635-1455817,1455997-1456051,1456415-1456611,
           1456850-1457206,1457355-1457424,1457527-1457672,
           1457786-1457831,1457910-1457962,1458507-1458651,
           1459268-1459386,1459494-1459565,1459872-1459975,
           1460117-1460173,1460260-1460452,1460535-1460678,
           1460825-1460927,1461444-1461592,1462674-1462728,
           1464037-1464227,1464580-1464701,1464831-1464978,
           1465354-1465423,1465499-1465644,1466097-1466247,
           1466614-1466732,1466807-1466848,1466849-1466961,
           1467496-1467552,1467642-1467834,1468040-1468183,
           1468567-1468665
          Length = 1280

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 378 SAATHNTSQSSFGITRLINSGLKSTSLTLMSVALIAR 268
           SA T   S++SF   ++IN G    SLT+ +  L AR
Sbjct: 584 SAITWQDSENSFLRVKIINFGSDPVSLTISATGLQAR 620


>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
            28679221-28679265,28679523-28679594,28679721-28679759,
            28679966-28680061,28680492-28680566,28681717-28681764,
            28681888-28681971,28682141-28682341,28682394-28682561,
            28683232-28683372,28683470-28683517,28683845-28684087,
            28684184-28684297,28685134-28685163,28685361-28685951,
            28686033-28686620,28686744-28686863,28687764-28687938,
            28688397-28688562,28688653-28688755,28689227-28689319,
            28690759-28690918,28691754-28691872
          Length = 1275

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 275  INATDIKVKEVDFNPEFISRVIPKLDWEV--LWVAADSIGHSDGLPRSF 415
            I A D     VDF  E +SR++ K  W++  LWV    + +    PRSF
Sbjct: 1149 IQALDAFPALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQT-QPRSF 1196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,147
Number of Sequences: 37544
Number of extensions: 222638
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)