Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31036.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22270.1 68414.m02783 expressed protein contains Pfam domain ...    56   1e-08
At1g78190.1 68414.m09111 expressed protein                             49   2e-06
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t...    30   0.89 
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1...    27   6.2  
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1...    27   6.2  

>At1g22270.1 68414.m02783 expressed protein contains Pfam domain
           PF03966: Protein of unknown function (DUF343)
          Length = 124

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = +2

Query: 257 TGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSFRK*V**K 436
           +G+PL I A ++  KEVDFNP+FI  +  K++W+ L   A S+G+++ LP         K
Sbjct: 18  SGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAE-LPEESPDAAVLK 76

Query: 437 --RRVFEEXXXXXXXXXXXXXTLDXSESGRQFPISKGIP 547
                 ++              L   E+GR+FP++KGIP
Sbjct: 77  SDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIP 115


>At1g78190.1 68414.m09111 expressed protein
          Length = 124

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
 Frame = +2

Query: 263 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSF--RK*V**K 436
           +PL I A  + VKEVDFNP+F+  +  K+DW+ L   A S+ +++ LP +      +   
Sbjct: 20  FPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTE-LPDNAPDTTTLESD 78

Query: 437 RRVFEEXXXXXXXXXXXXXTLDXSESGRQFPISKGIP 547
                +             +L   E+GR+F +SKGIP
Sbjct: 79  ETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIP 115


>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
           enhancer of zeste-like protein 1(EZA1) (GI:4185507)
           [Arabidopsis thaliana]; similar to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 856

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 486 QLPPLTRLYELSSKTLRFHHTYFLKDLGRPSLWPMLSAATHNT 358
           ++PP TRL+    KT +    Y  K  G PS+W  ++   + +
Sbjct: 564 EVPPRTRLFRRKGKTRKL--KYSTKSAGHPSVWKRIAGGKNQS 604


>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 634

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 236 EMLERC--LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVL 364
           E +ER   L G    I+  +  +  ++  PE I + +PK++W+ L
Sbjct: 161 EAIERSSDLEGATYDIDTINESIGNLEITPEMIRQFLPKINWDSL 205


>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 847

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 236 EMLERC--LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVL 364
           E +ER   L G    I+  +  +  ++  PE I + +PK++W+ L
Sbjct: 374 EAIERSSDLEGATYDIDTINESIGNLEITPEMIRQFLPKINWDSL 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,645,455
Number of Sequences: 28952
Number of extensions: 195990
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)