Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31034.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   102   3e-23
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   102   3e-23
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    31   0.096
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   2.7  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   6.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.3  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   8.4  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   8.4  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    25   8.4  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  102 bits (245), Expect = 3e-23
 Identities = 45/76 (59%), Positives = 61/76 (80%)
 Frame = +3

Query: 27  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 207 DIRVTVKGGGHVAQVY 254
           DIRV V GGGHV+Q+Y
Sbjct: 61  DIRVRVSGGGHVSQIY 76



 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 45/62 (72%), Positives = 52/62 (83%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARXQX 436
           IRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVA PRR EPKKFGG GARAR Q 
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137

Query: 437 SY 442
           SY
Sbjct: 138 SY 139


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  102 bits (245), Expect = 3e-23
 Identities = 45/76 (59%), Positives = 61/76 (80%)
 Frame = +3

Query: 27  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 207 DIRVTVKGGGHVAQVY 254
           DIRV V GGGHV+Q+Y
Sbjct: 61  DIRVRVSGGGHVSQIY 76



 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 45/62 (72%), Positives = 52/62 (83%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARXQX 436
           IRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVA PRR EPKKFGG GARAR Q 
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137

Query: 437 SY 442
           SY
Sbjct: 138 SY 139


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 31.1 bits (67), Expect = 0.096
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +3

Query: 48  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 227
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 228 GGGHVAQ 248
           GGG   Q
Sbjct: 71  GGGPTGQ 77


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 229 VVVM*HKFTYQTSYFKGSDRLLPEICR 309
           V+V   KF    +Y KG+  ++P IC+
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICK 792


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 17/58 (29%), Positives = 21/58 (36%)
 Frame = +1

Query: 130 WLSPDCCSTNFRNLSFCSARKNSLWLTSE*QSRVVVM*HKFTYQTSYFKGSDRLLPEI 303
           W S D  S N    S  S  K S W   E +  +           S  K  +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 114  RLHAAFHDHACNTQLRWRFS 55
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 256 YQTSYFKGSDRLLPEICRRSLKEGNQRHPS 345
           Y   YF G D   PE C        QRH S
Sbjct: 42  YHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 410 PGARARXQXSYVKPSRKPSGGIVA 481
           P A      SYV+P  +PSGG+ A
Sbjct: 559 PDASYTGTGSYVQPMNQPSGGMGA 582


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 302 YVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGG 409
           ++DEA+ K+I  +   Y  +LL   P    P K GG
Sbjct: 226 FLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGG 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,385
Number of Sequences: 5004
Number of extensions: 42329
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)