Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31034.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 110 7e-25
11_01_0155 - 1287003-1287452 110 7e-25
07_03_0227 - 15398371-15398925 30 0.90
03_06_0097 - 31632238-31632525,31633386-31633769 30 0.90
11_06_0598 - 25391923-25393197 29 1.6
03_05_1118 - 30529768-30529945,30530336-30530432,30530451-305305... 29 2.1
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 4.8
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 28 4.8
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 4.8
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 6.3
>12_01_0152 - 1168928-1169377
Length = 149
Score = 110 bits (264), Expect = 7e-25
Identities = 52/73 (71%), Positives = 59/73 (80%)
Frame = +2
Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKF 403
+G S IRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVA PRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 404 GGPGARARXQXSY 442
GG GARAR Q SY
Sbjct: 136 GGRGARARFQKSY 148
Score = 97.9 bits (233), Expect = 4e-21
Identities = 41/79 (51%), Positives = 58/79 (73%)
Frame = +3
Query: 18 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 197
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 198 SMVDIRVTVKGGGHVAQVY 254
+D+R+ V+GGG +Q+Y
Sbjct: 67 KDIDMRIRVRGGGKTSQIY 85
>11_01_0155 - 1287003-1287452
Length = 149
Score = 110 bits (264), Expect = 7e-25
Identities = 52/73 (71%), Positives = 59/73 (80%)
Frame = +2
Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKF 403
+G S IRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVA PRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 404 GGPGARARXQXSY 442
GG GARAR Q SY
Sbjct: 136 GGRGARARFQKSY 148
Score = 97.9 bits (233), Expect = 4e-21
Identities = 41/79 (51%), Positives = 58/79 (73%)
Frame = +3
Query: 18 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 197
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 198 SMVDIRVTVKGGGHVAQVY 254
+D+R+ V+GGG +Q+Y
Sbjct: 67 KDIDMRIRVRGGGKTSQIY 85
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 0.90
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 168 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 58
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 30.3 bits (65), Expect = 0.90
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 30 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 200
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 201 MVDIRVTVKGGG 236
D+ V V GGG
Sbjct: 153 SYDVFVKVHGGG 164
>11_06_0598 - 25391923-25393197
Length = 424
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -2
Query: 453 EGLT*DXXYLARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 274
EG + LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 245 EGTVPETDKLATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>03_05_1118 -
30529768-30529945,30530336-30530432,30530451-30530544,
30531295-30531591,30531674-30532075
Length = 355
Score = 29.1 bits (62), Expect = 2.1
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +2
Query: 293 YQKYVDEA--SKKEIKDILVQYDRSL-LVAXPR-RC----EPKKFGGPGARARXQXSYVK 448
+++Y++ ++K I + YDR L L R RC PK P +AR K
Sbjct: 129 WREYIERKPEARKWINKPIDHYDRLLELFGKDRERCLASGSPKS--PPAKKARRDPPKEK 186
Query: 449 PSRKPSGGIVAGVVLSL 499
P R P+ G+V+ +V SL
Sbjct: 187 PQRTPTNGLVSPIVKSL 203
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 10 RQDVSPSRPSKYSDVRKPPPQLRIAS 87
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 48 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 227
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 228 GGGHVAQV 251
GGG QV
Sbjct: 354 GGGVSGQV 361
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 111 NGRPLDLVEPRLLQYKLQEPILLL 182
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 122 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 36
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,865,048
Number of Sequences: 37544
Number of extensions: 338697
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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