Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31034.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   109   8e-25
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           109   1e-24
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   109   1e-24
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    36   0.011
At1g43570.1 68414.m05001 hypothetical protein                          31   0.33 
At3g24255.1 68416.m03045 expressed protein                             27   5.3  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   9.3  
At3g62010.1 68416.m06964 expressed protein                             27   9.3  
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    27   9.3  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  109 bits (263), Expect = 8e-25
 Identities = 52/72 (72%), Positives = 60/72 (83%)
 Frame = +2

Query: 227 GWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFG 406
           G  + S    IRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVA PRRCE KKFG
Sbjct: 74  GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133

Query: 407 GPGARARXQXSY 442
           GPGARAR Q SY
Sbjct: 134 GPGARARFQKSY 145



 Score =  103 bits (248), Expect = 5e-23
 Identities = 42/75 (56%), Positives = 62/75 (82%)
 Frame = +3

Query: 30  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 209
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 210 IRVTVKGGGHVAQVY 254
           +R+   GGG+ ++VY
Sbjct: 68  MRIRATGGGNTSRVY 82


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  109 bits (261), Expect = 1e-24
 Identities = 50/62 (80%), Positives = 57/62 (91%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARXQX 436
           IRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVA PRRCEPKKFGG GAR+R Q 
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQK 143

Query: 437 SY 442
           SY
Sbjct: 144 SY 145



 Score =  102 bits (245), Expect = 1e-22
 Identities = 42/81 (51%), Positives = 64/81 (79%)
 Frame = +3

Query: 12  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 191
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 192 KFSMVDIRVTVKGGGHVAQVY 254
           +F+ V++R+ V GGGH +QVY
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVY 82


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  109 bits (261), Expect = 1e-24
 Identities = 50/62 (80%), Positives = 57/62 (91%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARXQX 436
           IRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVA PRRCEPKKFGG GAR+R Q 
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQK 143

Query: 437 SY 442
           SY
Sbjct: 144 SY 145



 Score =  103 bits (246), Expect = 9e-23
 Identities = 43/81 (53%), Positives = 64/81 (79%)
 Frame = +3

Query: 12  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 191
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 192 KFSMVDIRVTVKGGGHVAQVY 254
           +F+ V++R+ V GGGH +QVY
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVY 82


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +3

Query: 48  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 227
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 228 GGGHVAQV 251
           GGG   QV
Sbjct: 369 GGGTTGQV 376


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 387 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 280
           +R  S T + LSYC R+ LI     S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At3g24255.1 68416.m03045 expressed protein
          Length = 836

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 384 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAFEIACL 259
           R G  T++ LS+  R+ LIS    S T FW  A R    AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +1

Query: 121 HWTWLSPDCCSTNFRNLSFCSARKNSLW 204
           +W W   DC    F +L F    +N  W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149


>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +3

Query: 84   KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYLSD 263
            +R    L++NG P      R   Y +  P +   K+  + +  ++  +GGG   ++ ++D
Sbjct: 891  QRTSSRLQINGAPHVYKVDRYPVYSMATPTISGAKKMLAYLGTKLKEEGGGSTERIVVTD 950


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 108 HAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPP 7
           H   HD+  NT   W  S+++      W    PP
Sbjct: 22  HVLGHDNQLNTTSSWLKSHIKAATTTNWGRPKPP 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,876,195
Number of Sequences: 28952
Number of extensions: 241780
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)