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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31033.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   163   2e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   162   3e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   162   3e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    99   2e-22
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    97   2e-21
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    81   1e-16
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    38   7e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    36   0.005
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    36   0.005
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    34   0.012
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    34   0.016
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    33   0.021
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    31   0.15 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    31   0.15 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   0.34 
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   2.4  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    26   3.2  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   5.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   5.6  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   7.3  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   7.3  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  163 bits (395), Expect = 2e-41
 Identities = 76/87 (87%), Positives = 80/87 (91%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+  GTGEFEAGISK
Sbjct: 70  GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISK 129

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMD 509
           +GQTREHALLA+ LGVKQLIV VNKMD
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMD 156



 Score =  141 bits (341), Expect = 7e-35
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  162 bits (394), Expect = 3e-41
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GTGEFEAGISK
Sbjct: 70  GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMD 509
           +GQTREHALLA+ LGVKQLIV VNKMD
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMD 156



 Score =  141 bits (341), Expect = 7e-35
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  162 bits (394), Expect = 3e-41
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GTGEFEAGISK
Sbjct: 70  GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMD 509
           +GQTREHALLA+ LGVKQLIV VNKMD
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMD 156



 Score =  141 bits (341), Expect = 7e-35
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score =   99 bits (238), Expect = 2e-22
 Identities = 45/95 (47%), Positives = 63/95 (66%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G T+++    FET     +++DAPGH+ ++ NMI G SQAD  VL+++A  GEFEAG  +
Sbjct: 301 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER 360

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMDPLKPPYSE 533
            GQTREHA+LA   G+  L+V +NKMD     +SE
Sbjct: 361 GGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 395



 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 35/64 (54%), Positives = 47/64 (73%)
 Frame = +1

Query: 55  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
           K H+NIV IGHVD+GKST  G++++  G +DKRT+EK E+EA+E GK S+  +W LD   
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295

Query: 235 AERE 246
            ERE
Sbjct: 296 EERE 299


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 46/87 (52%), Positives = 57/87 (65%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G T+D+A   FE+ K    I DAPGHRDFI  MI G S AD AVL+V +    FE G  +
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMD 509
           NGQTREHA L   LG+ +++V VNK+D
Sbjct: 300 NGQTREHAYLLRALGISEIVVSVNKLD 326



 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 31/63 (49%), Positives = 44/63 (69%)
 Frame = +1

Query: 55  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
           K  +++VV GHVDSGKST  G ++++ G I+ R+++K   EA   GKGSF YAW+LD  +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234

Query: 235 AER 243
            ER
Sbjct: 235 EER 237


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 41/99 (41%), Positives = 62/99 (62%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TI  A  ++ET+  +   +D PGH D+IKNMITG +  D A+++V+A  G+       
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP----- 155

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMDPLKPPYSEAPDL 545
             QTREH LLA  +GVKQ++V +NK+D ++P   E  ++
Sbjct: 156 --QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEM 192



 Score = 35.1 bits (77), Expect = 0.007
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 49  KEKTHINIVVIGHVDSGKSTTTGHLIYKC 135
           ++K H+NI  IGHVD GK+T T   I KC
Sbjct: 49  RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = +3

Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFXLGV 476
           +V+ +D PGH   +  M+ G +  D A+L++A              QT EH      + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162

Query: 477 KQLIVGVNKMDPLKPPYSE 533
           K +I+  NK+D ++   +E
Sbjct: 163 KHIIILQNKVDLIRESAAE 181



 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 37  PKMGKEKTHINIVVIGHVDSGKST 108
           P +   +  INI  IGHV  GKST
Sbjct: 15  PAIISRQATINIGTIGHVAHGKST 38


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           MGK     N+ VI HVD GKST T  L+ K G
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44



 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
           + V +ID+PGH DF   +       D A+++V
Sbjct: 98  FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           MGK     N+ VI HVD GKST T  L+ K G
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44



 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
           + V +ID+PGH DF   +       D A+++V
Sbjct: 98  FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +3

Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 449
           FE S Y + IID PGH DF   +       D AVL++ A +G     I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196



 Score = 29.1 bits (62), Expect = 0.45
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 67  NIVVIGHVDSGKSTTTGHLIYKCGGI 144
           NI +  H+DSGK+T T  ++Y  G I
Sbjct: 61  NIGISAHIDSGKTTFTERVLYYTGRI 86


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 28/87 (32%), Positives = 40/87 (45%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G TI+ A   F      + +ID PGH DF   +    +  D AV I+     +  AG+  
Sbjct: 78  GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV-- 130

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMD 509
             QT+     A   G+ ++I  VNKMD
Sbjct: 131 EAQTKVVWKQATKRGIPKVIF-VNKMD 156



 Score = 28.7 bits (61), Expect = 0.60
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  NIVVIGHVDSGKSTTTGHLIYKCG 138
           N+ +I H+D+GK+T T  ++Y  G
Sbjct: 30  NVGIIAHIDAGKTTLTEKMLYYGG 53


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 33.5 bits (73), Expect = 0.021
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           F+    ++T +D PGH  F      G + AD  VL+VA   G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 270 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           ++ +    Y + +ID PGH DF   ++   +  +  +L+V A  G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160



 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 67  NIVVIGHVDSGKSTTTGHLIYKCGGIDK 150
           N  VI H+D GKST +  ++   G I++
Sbjct: 60  NWAVIAHIDHGKSTLSDCILKLTGVINE 87


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFXLG 473
           Y + +ID+PGH DF   + + +   D A ++V A  G     I+   Q       A+   
Sbjct: 94  YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQ-------AWIDR 146

Query: 474 VKQLIVGVNKMDPL 515
           +K ++V +NKMD L
Sbjct: 147 IKVILV-INKMDRL 159


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
           IID PGH  F      GTS  + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIV 389
           ID PGH DF+  +    + +D  VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = -1

Query: 383 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCIPXSRSAFSLSNTQAYL 204
           EH+A+ L  S   +L  IS  R  N GNI L S  +    +       S + L+ + A  
Sbjct: 5   EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61

Query: 203 KDPLPI 186
           K  LPI
Sbjct: 62  KALLPI 67


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 258 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 344
           I+I   + E   +++  T+ID PG  DFI N
Sbjct: 73  IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 229 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 101
           V  +PK I  I++ F  P S  S    C+Y     S D  W T
Sbjct: 31  VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 184 PGPPSRTSRWYVCQYHHIC 128
           P PP +T + Y  QY+ +C
Sbjct: 8   PAPPKKTLQLYTPQYYGLC 26


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 317 SINDGNIVLASFELPESNIDCIPXSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 138
           S++  +  L S+  P S    +     A      ++YL+ PL  S  S S  + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 353 CDHVLDEISVSRSINDGNIVLASFEL 276
           CDH+L  IS SR    G  +   FEL
Sbjct: 23  CDHLLQYISNSRDSKAGLKIFLVFEL 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,748
Number of Sequences: 5004
Number of extensions: 40804
Number of successful extensions: 147
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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