Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31033.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             112   2e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          102   2e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   8e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 82   3e-16
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              35   0.038
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.067
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.27 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.47 
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     31   0.62 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.4  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   7.6  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  112 bits (269), Expect = 2e-25
 Identities = 50/84 (59%), Positives = 64/84 (76%)
 Frame = +3

Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 437
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 438 TREHALLAFXLGVKQLIVGVNKMD 509
           TREHA+L   LGV QLIV +NK+D
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  102 bits (245), Expect = 2e-22
 Identities = 44/87 (50%), Positives = 62/87 (71%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMD 509
            GQTREHA+LA   GVK L++ VNKMD
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNKMD 293



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +1

Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
           G TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 187 MGKGSFKYAWVLDKLKAERE 246
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = +3

Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFXLGVKQLI 488
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 489 VGVNKMDPLKPPYSEAPD 542
           +  NK+D +K   S+A D
Sbjct: 123 ILQNKIDLVKE--SQAKD 138


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 25/73 (34%), Positives = 35/73 (47%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFXLGVK 479
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHA----KV 129

Query: 480 QLIVGVNKMDPLK 518
            LIV +NK+D  K
Sbjct: 130 PLIVAINKIDKPK 142


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 23/87 (26%), Positives = 34/87 (39%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
           G T  I  +  +     +  +D PGH  F      G    D  +++VAA           
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177

Query: 429 NGQTREHALLAFXLGVKQLIVGVNKMD 509
             QT+E    A   GV  +I  +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = +3

Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           G ++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 58  THINIVVIGHVDSGKSTTTGHLIY 129
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 67   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 443
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,431
Number of Sequences: 59808
Number of extensions: 315848
Number of successful extensions: 733
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)