Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31032.Seq
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      135   2e-32
SB_58538| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.96 
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)                     29   1.7  
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)                     29   1.7  
SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)                   29   1.7  
SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   1.7  
SB_30646| Best HMM Match : CHASE3 (HMM E-Value=2.7)                    29   1.7  
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)               28   3.9  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   5.1  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               27   6.8  
SB_36612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.0  
SB_36345| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    27   9.0  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  135 bits (327), Expect = 2e-32
 Identities = 60/80 (75%), Positives = 70/80 (87%)
 Frame = +3

Query: 15  MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
           MTN+KGYRRGTR +F+++FR  G   LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 195 TGRVYNVTAHALGVIVNKRV 254
           TGRVYNVT  ALGV+VNK+V
Sbjct: 483 TGRVYNVTKRALGVVVNKQV 502


>SB_58538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 180 VYHGKTGRVYNVTAHALGV-IVNKRVAEGLYRSASISVLSMSSTPSAD 320
           V HGK   +  VTAHA    +   ++AEG  RS  I   ++++  SAD
Sbjct: 28  VIHGKRSHL-GVTAHASEYQLTQNKIAEGRQRSRRIDYKALNNVSSAD 74


>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 622

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 278 INIRVEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKTVNLKRQPAPPKAAH-IVSGTGK 451
           IN+ +    +SK  QD+LK + K NER +       +   +KR+     A + +VS  GK
Sbjct: 109 INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 167

Query: 452 PVL 460
           PVL
Sbjct: 168 PVL 170


>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 324

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 278 INIRVEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKTVNLKRQPAPPKAAH-IVSGTGK 451
           IN+ +    +SK  QD+LK + K NER +       +   +KR+     A + +VS  GK
Sbjct: 28  INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 86

Query: 452 PVL 460
           PVL
Sbjct: 87  PVL 89


>SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)
          Length = 324

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 278 INIRVEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKTVNLKRQPAPPKAAH-IVSGTGK 451
           IN+ +    +SK  QD+LK + K NER +       +   +KR+     A + +VS  GK
Sbjct: 28  INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 86

Query: 452 PVL 460
           PVL
Sbjct: 87  PVL 89


>SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 278 INIRVEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKTVNLKRQPAPPKAAH-IVSGTGK 451
           IN+ +    +SK  QD+LK + K NER +       +   +KR+     A + +VS  GK
Sbjct: 74  INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 132

Query: 452 PVL 460
           PVL
Sbjct: 133 PVL 135


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 272 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 388
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_30646| Best HMM Match : CHASE3 (HMM E-Value=2.7)
          Length = 130

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 278 INIRVEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKTVNLKRQPAPPKAAH-IVSGTGK 451
           IN+ +    +SK  QD+LK + K NER +       +   +KR+     A + +VS  GK
Sbjct: 39  INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 97

Query: 452 PVL 460
           PVL
Sbjct: 98  PVL 100


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 29  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 29  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 29  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 29  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 245 QACCGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKR 403
           +ACC  ++   I+ ++E +K       F +++KENE  LKE +   +   L+R
Sbjct: 711 KACCQVLLQMTIDAKLEEIK-------FEEQIKENEENLKEFRLLSEKKELER 756


>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
          Length = 218

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +2

Query: 83  NYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIP--WKDRS-RVQRDCSCSRCDCQQAC 253
           N  A+ + ESV+SWR     R++   +  + +  P    DRS +V       RCD Q   
Sbjct: 85  NPDAMLLRESVRSWRE-NIPRKYSDLRPTSLKISPSCVPDRSEKVGISFMSGRCDMQYHG 143

Query: 254 CGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 367
             R +P+ +   V  +  S+ R+  +  V    R L+E
Sbjct: 144 ISRPVPESV-FEVTRIHQSRRRKRRVNHVTRAWRRLRE 180


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 247
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 376 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSATRLLTITPRA*AVTLYT 203
           S+ F +   I  D+LK  L +  +     TD++ +  +YN + + LL    +    T+  
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286

Query: 202 RPVFPWY 182
           RP  PW+
Sbjct: 287 RPRLPWF 293


>SB_36612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 308 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTGKP 454
           + C+    KR  ++E+     +A+G T   KRQ    +AA      GKP
Sbjct: 23  ASCKTSQDKRQHQDEQAATPRRASGNTKTSKRQDQDEQAARPRRAGGKP 71


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 294 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 428
           ++S+ PS  KT+   ++R     RKP +PAR ST       ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 128  HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDC 241
            HC RH ++   +   AT+ +PW  KD S   R C  + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315


>SB_36345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 194 DRSRVQRDCSCSRCDCQQACCGRIIPKRINIRVEHVKHSKCRQDFLK 334
           D  + + DC  +RC      C + IPK +   + H KH    QD L+
Sbjct: 123 DTCKTESDCGGNRCCVLNKFCMKKIPKDMTCYLSH-KHKCGCQDGLE 168


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 188 WKDRSRVQRDCSCSRCDCQQACCG--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 361
           WK++  ++ +     C  Q+      + +P + + ++  ++ SKC Q+ L   KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,788,432
Number of Sequences: 59808
Number of extensions: 363286
Number of successful extensions: 1192
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)