Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31032.Seq
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   119   1e-27
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.091
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.091
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.091
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    30   0.85 
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical...    29   2.0  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U00065-10|AAA50733.2|  382|Caenorhabditis elegans Hypothetical p...    27   7.9  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  119 bits (286), Expect = 1e-27
 Identities = 55/80 (68%), Positives = 63/80 (78%)
 Frame = +3

Query: 15  MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 195 TGRVYNVTAHALGVIVNKRV 254
           TGR++NVT  A+G+IVNKRV
Sbjct: 61  TGRIFNVTRGAVGIIVNKRV 80



 Score = 80.2 bits (189), Expect = 8e-16
 Identities = 40/72 (55%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
 Frame = +2

Query: 257 GRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH- 430
           G I+PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P  P+ AH 
Sbjct: 82  GNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHT 141

Query: 431 IVSGTGKPVLLA 466
           + +   +P LLA
Sbjct: 142 VTTQNNEPELLA 153


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 116 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 253
           Q  RHC  Q   C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 143 RQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
           R   S+   +  SI     SRV+R   C  C C   CCG
Sbjct: 37  RSSASTTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 75


>AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical
           protein Y45G12C.1 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 310 GVLDMLNT-DIDALRYNPSATRLLTITPRA*AVTLYTRPVFPWYTLCGI 167
           G+LD   T DID L+ N  + +L  +     A T +T  +  W+TLC +
Sbjct: 272 GLLDYFPTFDIDDLKSNEKSLQLSAMLVYL-ARTQFTLDILKWHTLCAL 319


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 155 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
           S+   +  SI     SRV+R   C  C C   CCG
Sbjct: 40  STTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 74


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 155 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
           S+   +  SI     SRV+R   C  C C   CCG
Sbjct: 42  STTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 76


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 392 NLKRQPAPPKAAHIVS 439
           NL+R+PAPPK  H+ S
Sbjct: 462 NLRRRPAPPKQNHVAS 477


>Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical
           protein C34D1.2 protein.
          Length = 114

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 197 RSRVQRDCSCSRCDCQQACCGRIIPKRI-NIRVEH 298
           R R    C C   DC    CG +  +RI NIR+++
Sbjct: 53  RPRKNHKCECPYADCTCEKCGLVEKRRILNIRLQN 87


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +2

Query: 224 CSRCDCQQACCGRIIPKRINIRVEHVKHSKCRQDF--LKRVKENE-RLLKEAKAAGKTVN 394
           C R  CQ+  CGR    +   +V H     C + F  LK++ ENE   L      G T  
Sbjct: 147 CPRIKCQRPGCGREFCFKCR-KVWHEGTRTCSKTFEQLKKITENEINDLHYMSPTGCTFW 205

Query: 395 LKRQPAPPKAA--HIVSGTGKPVLLA 466
            K+Q +  K     I S  G PV++A
Sbjct: 206 GKKQWSNKKRLLWQIGSLIGSPVVIA 231


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 352 LILFDSLKEVLSALGVL 302
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 352 LILFDSLKEVLSALGVL 302
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 200 SRVQRDCSCSRCDCQQACCG 259
           SRV+R   C  C C   CCG
Sbjct: 55  SRVKRQGGCGCCGCGCGCCG 74


>U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical
           protein C37A2.8a protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 168 MPHKVYHGKTGRVYNVTAHALGVIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESKR 347
           +P   +H +  RVY  +   L +  NKR  E         +L MS     DK   +E+++
Sbjct: 189 IPEHYHHSEEQRVYGTSHMRLSLNENKRKEE------IEKLLEMSKKTDMDKAKKKETEK 242

Query: 348 MRGY*RKPRL 377
            R   R+ +L
Sbjct: 243 HRDILRREKL 252


>U00065-10|AAA50733.2|  382|Caenorhabditis elegans Hypothetical
           protein D1044.1 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 173 TQSIPWKDRSRVQRDCSCSRCDCQQAC-CGRIIPKRINIRVEHVKHSKCRQDFLKRVKEN 349
           +  IPWK+   V  D +  R          ++ P  ++ R++ VKH+          K+N
Sbjct: 177 SDEIPWKNYENVLYDAAYIRMLHNDTLDFEKLCPAELSGRIQEVKHAFDEDGVRNSEKKN 236

Query: 350 ERL 358
           E+L
Sbjct: 237 EKL 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,983,279
Number of Sequences: 27780
Number of extensions: 251527
Number of successful extensions: 1004
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)