Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31031.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   5.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 367 CKAR*TRYXCYTQLKVHFRSSRASK 441
           CKA    + C  QLKVH R+    K
Sbjct: 206 CKACGKGFTCSKQLKVHTRTHTGEK 230


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  RKSVFSGSSLTGELISISSLICPMSNSW 96
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  RKSVFSGSSLTGELISISSLICPMSNSW 96
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  RKSVFSGSSLTGELISISSLICPMSNSW 96
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 277 RKSP-SLTSLNAYLIKNQTITCPIKVSW 303


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  RKSVFSGSSLTGELISISSLICPMSNSW 96
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +1

Query: 349 LSHVQACKAR*TRYXCYTQLKVHFRSSRASKTT 447
           ++  Q C      + CY  LK HF+       T
Sbjct: 2   INEPQECPYCRRNFSCYYSLKRHFQDKHEQSDT 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,740
Number of Sequences: 438
Number of extensions: 2181
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)