Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31031.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   111   3e-25
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   111   3e-25
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           108   2e-24
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   108   2e-24
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   107   3e-24
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative           88   4e-18
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    66   1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    40   0.001
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   1.7  

>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  111 bits (267), Expect = 3e-25
 Identities = 46/55 (83%), Positives = 53/55 (96%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIXATHSSRFI 418
           +M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+ ATHSSRFI
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFI 149



 Score =  101 bits (242), Expect = 3e-22
 Identities = 48/80 (60%), Positives = 58/80 (72%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 195 PPNEKPEIVKTHLRXMIIVP 254
           P  EKPE V+THLR MIIVP
Sbjct: 75  PAGEKPEPVRTHLRNMIIVP 94


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  111 bits (267), Expect = 3e-25
 Identities = 46/55 (83%), Positives = 53/55 (96%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIXATHSSRFI 418
           +M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+ ATHSSRFI
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFI 149



 Score =  101 bits (242), Expect = 3e-22
 Identities = 48/80 (60%), Positives = 58/80 (72%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 195 PPNEKPEIVKTHLRXMIIVP 254
           P  EKPE V+THLR MIIVP
Sbjct: 75  PQGEKPEPVRTHLRNMIIVP 94


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  108 bits (260), Expect = 2e-24
 Identities = 45/55 (81%), Positives = 53/55 (96%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIXATHSSRFI 418
           +M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+ AT+SSRFI
Sbjct: 92  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFI 146



 Score = 97.1 bits (231), Expect = 6e-21
 Identities = 48/80 (60%), Positives = 56/80 (70%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF++RGVDLD LLDM  E L++            GL RKPMAL+KKLR+AK EA
Sbjct: 12  KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query: 195 PPNEKPEIVKTHLRXMIIVP 254
           P  EKP  V+THLR MIIVP
Sbjct: 72  PAGEKPASVRTHLRNMIIVP 91


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  108 bits (259), Expect = 2e-24
 Identities = 44/55 (80%), Positives = 53/55 (96%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIXATHSSRFI 418
           +M+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+ AT+SSRFI
Sbjct: 93  EMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFI 147



 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 48/80 (60%), Positives = 57/80 (71%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF++RGVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 195 PPNEKPEIVKTHLRXMIIVP 254
           P  EKP  V+THLR MIIVP
Sbjct: 73  PAGEKPAAVRTHLRNMIIVP 92


>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  107 bits (258), Expect = 3e-24
 Identities = 44/55 (80%), Positives = 52/55 (94%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIXATHSSRFI 418
           +M+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG  ATHSSRFI
Sbjct: 95  EMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFI 149



 Score =  105 bits (252), Expect = 2e-23
 Identities = 48/82 (58%), Positives = 61/82 (74%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           L KKR F+KF+++GVDLD LLDMP + L+EL           GL RKPMAL+KKLR+AK 
Sbjct: 13  LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 189 EAPPNEKPEIVKTHLRXMIIVP 254
           +AP  EKPE+V+THLR M+I+P
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMP 94


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF++RG ++D LL M N  L +L +         GLK++P+ L+KKLRRAKKEA
Sbjct: 17  KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76

Query: 195 PPNE--KPEIVKTHLRXMIIVP 254
                 KPE+VKTHLR MIIVP
Sbjct: 77  SDENKMKPEVVKTHLRNMIIVP 98



 Score = 73.3 bits (172), Expect = 8e-14
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIXA----THSSRFI 418
           +M+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I        S+RFI
Sbjct: 99  EMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFI 157


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           KKRIF+KF++RGVDLD LLDM  E L++            G  RKPMAL+KKLR+A K
Sbjct: 12  KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 382
           + V S V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 168 EYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 311 IKPEMIGHYLGEFSVTYKPVKHGRPGIXATHSSR 412
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,387,923
Number of Sequences: 28952
Number of extensions: 165925
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)