Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31030.Seq
(609 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 152 7e-36
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 148 1e-34
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 134 2e-30
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 127 2e-28
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 115 8e-25
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 112 7e-24
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 109 4e-23
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 107 3e-22
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 101 1e-20
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 101 2e-20
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 96 5e-19
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 93 4e-18
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 81 2e-14
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 78 2e-13
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 73 7e-12
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 71 2e-11
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 70 5e-11
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 68 2e-10
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 66 8e-10
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 63 4e-09
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 62 8e-09
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 60 4e-08
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 58 2e-07
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 58 2e-07
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 58 2e-07
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 57 3e-07
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 56 5e-07
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 55 2e-06
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 53 6e-06
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 50 4e-05
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 50 6e-05
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 49 1e-04
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 48 2e-04
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 48 2e-04
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 44 0.002
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 42 0.009
UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42; Lactob... 37 0.43
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 35 1.3
UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32; Bacter... 35 1.3
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 34 2.3
UniRef50_UPI0000E493E2 Cluster: PREDICTED: similar to kinesin, p... 34 2.3
UniRef50_Q11R51 Cluster: Putative uncharacterized protein; n=1; ... 34 2.3
UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;... 34 2.3
UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage Barnyard... 33 4.0
UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1; Tr... 33 4.0
UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large rib... 33 7.0
UniRef50_UPI0000E4735E Cluster: PREDICTED: similar to pats1; n=2... 32 9.3
UniRef50_Q8S473 Cluster: Putative RIRE2 orf3; n=1; Zea mays|Rep:... 32 9.3
UniRef50_Q54I73 Cluster: Putative uncharacterized protein; n=1; ... 32 9.3
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 152 bits (368), Expect = 7e-36
Identities = 65/86 (75%), Positives = 78/86 (90%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HLLGRLA+VIAK +L G KVVVVRCE + +SG+FFRNK+K +++LRKRCNVNPARGPFHF
Sbjct: 16 HLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYLRKRCNVNPARGPFHF 75
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAPS++LWK VRGM+PHKT+RG NAL
Sbjct: 76 RAPSRMLWKAVRGMVPHKTKRGHNAL 101
Score = 94.7 bits (225), Expect = 2e-18
Identities = 43/113 (38%), Positives = 61/113 (53%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + L+RL+ Y+G P PFD CL+P R +C VGR++HE+GWK
Sbjct: 91 PHKTKRGHNALKRLKVYEGIPSPFDRQKRLCVPTAMRQLCLRPDRKFCDVGRVAHEVGWK 150
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQSYGY 563
YRDVV LE KRK K+ + KKLK++T A + +++ YGY
Sbjct: 151 YRDVVNNLEAKRKIKSRLSYLHSKKLKKLTWKARTAVADKVKDQDAVLRKYGY 203
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 148 bits (358), Expect = 1e-34
Identities = 63/86 (73%), Positives = 79/86 (91%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++LRKRCNVNPARGPFHF
Sbjct: 16 HLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHF 75
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAPS+I +K VRGMIPHKT+RG+ AL
Sbjct: 76 RAPSRIFYKAVRGMIPHKTKRGQAAL 101
Score = 95.5 bits (227), Expect = 9e-19
Identities = 44/113 (38%), Positives = 61/113 (53%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + Q L RLR +DG P P+D L+ R YC VGRLSHE+GW
Sbjct: 91 PHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWH 150
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQSYGY 563
Y+DV++ LE KRK K + + ++LK++T A + F II+SYGY
Sbjct: 151 YQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 134 bits (324), Expect = 2e-30
Identities = 60/86 (69%), Positives = 71/86 (82%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HLLGRLAA +AK LL G +VV VR E+INISG+ FRNKLK +FL+KR N NP RGPFHF
Sbjct: 13 HLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHF 72
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
R+P++ILW+T+RGMIPHKT RG AL
Sbjct: 73 RSPARILWRTIRGMIPHKTPRGAAAL 98
Score = 74.5 bits (175), Expect = 2e-12
Identities = 34/103 (33%), Positives = 54/103 (52%)
Frame = +3
Query: 255 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 434
L RL+ ++G PPP+D LKPGR +C +GRL+ E+GW++ D+V +LE+
Sbjct: 98 LERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEE 157
Query: 435 KRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQSYGY 563
KRK K+ A +K L + A + + + YG+
Sbjct: 158 KRKTKSAAFYARKKTLVNLRAKAAVAVASKTANIQKELDHYGF 200
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 127 bits (306), Expect = 2e-28
Identities = 55/86 (63%), Positives = 69/86 (80%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGRL++++AK LL G +VVVVRCE+I +SG R K+K + FLRKR N P+ GP HF
Sbjct: 19 HMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 78
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAPSKILW+T+RGMIPHKT+RG AL
Sbjct: 79 RAPSKILWRTIRGMIPHKTKRGAAAL 104
Score = 70.9 bits (166), Expect = 2e-11
Identities = 33/91 (36%), Positives = 52/91 (57%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + L RL+ Y+G PPP+D L+ G YC +G+LS E+GW
Sbjct: 94 PHKTKRGAAALARLKVYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWN 153
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 497
+ D +++LEDKRK +A +V YE++ K++ K
Sbjct: 154 HYDTIKELEDKRKERA--QVTYERR-KQLAK 181
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 115 bits (277), Expect = 8e-25
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HLLGRLA+ +AK LL G ++VVVR E INISG+ FRN++K FL K N NP RG HF
Sbjct: 85 HLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHF 144
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAPS+I W+ VRGM+PHKT +G AL
Sbjct: 145 RAPSRIFWRAVRGMLPHKTPKGAAAL 170
Score = 50.4 bits (115), Expect = 3e-05
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +3
Query: 255 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 434
L RL+ ++G P P+D L+ R C +G LS +GW + ++ KLE+
Sbjct: 170 LERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEE 229
Query: 435 KRKGKAVKRVAYEKKLKR 488
KR+ +A + ++KK+K+
Sbjct: 230 KRRARA--KTYHDKKVKQ 245
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 112 bits (269), Expect = 7e-24
Identities = 52/94 (55%), Positives = 65/94 (69%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGR AAV+AK LL G K+ VVRCEQ+NI+G RNK+K + +LRKR NP +GPFH
Sbjct: 32 HVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNPTKGPFHH 91
Query: 181 RAPSKILWKTVRGMIPHKTERGKNALGGYVHMTG 282
RAPS + +TVR M+P T+RG AL V G
Sbjct: 92 RAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEG 125
Score = 48.0 bits (109), Expect = 2e-04
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPF-DNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGW 401
P + + L L Y+G PP C + R Y +G + +GW
Sbjct: 107 PRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQRHVCYRSERPYTVLGNMCKHVGW 166
Query: 402 KYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRC-RRRQHHFTTIIQSYGY 563
KY DVV LE R KA + + KL+ K A + H +++ +GY
Sbjct: 167 KYSDVVANLEKARVEKASRHHEKQAKLRDAWKSARKEALAKMPKHNVEVLKKFGY 221
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 109 bits (263), Expect = 4e-23
Identities = 52/79 (65%), Positives = 63/79 (79%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HLLG LAA +AK +L G KVVVV E INISGNF+RNKLK ++FL K+ N NP+RGP+ F
Sbjct: 14 HLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNTNPSRGPYRF 72
Query: 181 RAPSKILWKTVRGMIPHKT 237
+APS+I W T RGM+PHKT
Sbjct: 73 QAPSRIFWWTARGMLPHKT 91
Score = 60.5 bits (140), Expect = 3e-08
Identities = 26/72 (36%), Positives = 44/72 (61%)
Frame = +3
Query: 345 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRR 524
LKP R + ++GRL+H++GWKY+ V LE+ RK KA +K+L R+ K A ++
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQLMRLWKQAKKNVEKK 157
Query: 525 QHHFTTIIQSYG 560
+T ++++G
Sbjct: 158 TDKYTEFLKTHG 169
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 107 bits (256), Expect = 3e-22
Identities = 45/86 (52%), Positives = 65/86 (75%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HLLGR+A++ AK +L+G+K++++R E +I+G RN K S +K+ N NP RGPFHF
Sbjct: 11 HLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNTNPRRGPFHF 70
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
++PSKIL++T++ MIPHKT RG AL
Sbjct: 71 KSPSKILYQTIKRMIPHKTMRGSKAL 96
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 101 bits (243), Expect = 1e-20
Identities = 46/98 (46%), Positives = 63/98 (64%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HL GRLA++++K LL+G VVVVR E I +SG R ++ + KR N NP +GP+H+
Sbjct: 12 HLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMNTNPKKGPYHY 71
Query: 181 RAPSKILWKTVRGMIPHKTERGKNALGGYVHMTGALLP 294
+PS++ WKTVRGM+PHKT RG A + G P
Sbjct: 72 TSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAP 109
Score = 48.4 bits (110), Expect = 1e-04
Identities = 26/101 (25%), Positives = 44/101 (43%)
Frame = +3
Query: 261 RLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKR 440
R + Y+G P P+D L G +C +G +IGWK+ +V++LE KR
Sbjct: 99 RFKAYEGIPAPYDKVKRAVVPEALKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELEAKR 158
Query: 441 KGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQSYGY 563
+ A + A +K+ A + +I++ GY
Sbjct: 159 QTAASEYWAQKKEANSKFAAAKAAANAQLGDLQQLIEATGY 199
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 101 bits (241), Expect = 2e-20
Identities = 46/86 (53%), Positives = 64/86 (74%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N RGPFHF
Sbjct: 11 HILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNHLRGPFHF 70
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAP++I+ +T+RGMIP+KT RG +A+
Sbjct: 71 RAPAEIVRRTIRGMIPYKTVRGSDAM 96
Score = 55.2 bits (127), Expect = 1e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +3
Query: 249 ECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKL 428
+ + RLR YDG PP CL+P R C VGR++HEIGW++ V +
Sbjct: 94 DAMSRLRVYDGIPPCCARYKRVVCPSAMAYLCLRPERRRCEVGRVAHEIGWQHAADVERY 153
Query: 429 EDKRKGKAVK----RVAYEKKL-KRITKDA 503
E +R + K ++ +KK+ + KDA
Sbjct: 154 EKRRLEECDKWYQDKIQIDKKIAEAAEKDA 183
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 96.3 bits (229), Expect = 5e-19
Identities = 39/75 (52%), Positives = 53/75 (70%)
Frame = +3
Query: 342 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRR 521
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+ K + +K+KR+TK A + +
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRLTKKASKKIEK 63
Query: 522 RQHHFTTIIQSYGYN 566
+ +T +I+SYGYN
Sbjct: 64 QVAPYTAVIKSYGYN 78
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 93.5 bits (222), Expect = 4e-18
Identities = 46/85 (54%), Positives = 56/85 (65%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP GPFH
Sbjct: 12 HIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNPRDGPFHQ 71
Query: 181 RAPSKILWKTVRGMIPHKTERGKNA 255
RAP +I + VRGMIP+KT RG +A
Sbjct: 72 RAPHEIFARAVRGMIPYKTHRGADA 96
Score = 41.9 bits (94), Expect = 0.011
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + L+ Y+G P + + + R +GRLS +GWK
Sbjct: 87 PYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRCVSIHTDRPTTKLGRLSTTMGWK 146
Query: 405 YRDVVRKLEDKRKGKAVK 458
Y +VV +LE++RK ++ K
Sbjct: 147 YGNVVAQLEEQRKAESAK 164
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 81.4 bits (192), Expect = 2e-14
Identities = 42/83 (50%), Positives = 52/83 (62%)
Frame = +1
Query: 10 GRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAP 189
G+LAA +AK+LLEG +V VV E+ G+ R K +L KRC VNP RGPFHFR P
Sbjct: 17 GKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNPRRGPFHFREP 76
Query: 190 SKILWKTVRGMIPHKTERGKNAL 258
L K +R MI +K RGK A+
Sbjct: 77 RMHLAKIIRRMISYKKPRGKAAM 99
Score = 35.1 bits (77), Expect = 1.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +3
Query: 255 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 434
+ RL TY+G P + + P R Y +G+L GWK+ + + L D
Sbjct: 99 MSRLATYEGIPRELEGQPRYKVTCAFVKYTGNPNR-YVTLGKLLSMFGWKHAEAAKSLTD 157
Query: 435 KRKGK----AVKRVAYEKKLKRITKD 500
+ K + ++++ +KK++ + D
Sbjct: 158 ELKERESLASLQKKDLDKKIEELKTD 183
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 77.8 bits (183), Expect = 2e-13
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P GP+H
Sbjct: 7 HIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPEHGPYHP 66
Query: 181 RAPSKILWKTVRGMIPHKTERGKNA---LGGYVHMTGAL 288
R P I+ + +RGM+P K GK A L Y+ G L
Sbjct: 67 RRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSPGHL 105
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 72.5 bits (170), Expect = 7e-12
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFRNKLKLMSFLRKRCNVNPARGPFH 177
+LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR NP RGPF+
Sbjct: 10 ILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TNPRRGPFY 67
Query: 178 FRAPSKILWKTVRGMIPHKTERGKNA 255
+ +I+ +T+RGM+P KT+RG+ A
Sbjct: 68 PKRSDEIVRRTIRGMLPWKTDRGRKA 93
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 70.9 bits (166), Expect = 2e-11
Identities = 31/69 (44%), Positives = 47/69 (68%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR N NP RG FH
Sbjct: 19 HVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRVNTNPTRGAFHH 78
Query: 181 RAPSKILWK 207
R+P++++ K
Sbjct: 79 RSPAEMVRK 87
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 69.7 bits (163), Expect = 5e-11
Identities = 40/86 (46%), Positives = 50/86 (58%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+L RLA++IAK LL G +VV R N P+ GP HF
Sbjct: 19 HMLSRLASIIAKELLNGKRVV--------------------------RMNTKPSHGPIHF 52
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
R+P+KILW+TVRGMIPHKT+RG+ AL
Sbjct: 53 RSPAKILWRTVRGMIPHKTKRGEAAL 78
Score = 53.2 bits (122), Expect = 5e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + + L RL+ Y+ PP+D L+PG YC +G+LS E+GW
Sbjct: 68 PHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWN 127
Query: 405 YRDVVR 422
Y D +R
Sbjct: 128 YYDTIR 133
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 67.7 bits (158), Expect = 2e-10
Identities = 35/84 (41%), Positives = 56/84 (66%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 183
+LGRLA+V+AK +L+G ++ V+ E+ I+G +N +K +L+K +P +GPF+ R
Sbjct: 24 VLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPKKGPFYPR 80
Query: 184 APSKILWKTVRGMIPHKTERGKNA 255
P I + VRGM+P KT+RG+ A
Sbjct: 81 RPDLIFRRVVRGMLPWKTKRGREA 104
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 65.7 bits (153), Expect = 8e-10
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+ GRL++ +AK+L +G++V +V CE+I SG + FL +NP GP H+
Sbjct: 21 HIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINSIINPKHGPVHY 80
Query: 181 RAPSKILWKTVRGMIPH-KTERGKNAL 258
R P I+ K +R M+P+ + GK ++
Sbjct: 81 RRPDTIITKMIRQMLPYDRKPSGKESI 107
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 63.3 bits (147), Expect = 4e-09
Identities = 33/85 (38%), Positives = 53/85 (62%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K + +GP+
Sbjct: 24 HILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKEKGPYFP 80
Query: 181 RAPSKILWKTVRGMIPHKTERGKNA 255
R P +I +TVRGM+P K+ RG++A
Sbjct: 81 RHPERIFKRTVRGMLPWKSSRGRDA 105
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 62.5 bits (145), Expect = 8e-09
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
+LGRLA+++AK L + +VRCE+I ISG R K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITF 59
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 60.1 bits (139), Expect = 4e-08
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLK-LMSFLRKRCNVNP-ARGPF 174
H+ GRLA+V+AK LL+G++VVVV E+I I+G R K L ++ + NP RGP
Sbjct: 15 HIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRWVEWKTYYNPELRGPK 74
Query: 175 HFRAPSKILWKTVRGMIPHKTERGKNAL 258
+ + P ++ + VRGM+P + G+++L
Sbjct: 75 YPKTPDRLFKRMVRGMLPMEKTIGRDSL 102
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/85 (34%), Positives = 50/85 (58%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 183
+LGR+++ +A+ +L+G V VV E+ I+GN + M R + GP++ +
Sbjct: 18 ILGRVSSKVAQRVLDGETVAVVNAERAVITGN----EEATMETYHTRAELGSDSGPYYPK 73
Query: 184 APSKILWKTVRGMIPHKTERGKNAL 258
P +I + +RGM+P+KTE G+ AL
Sbjct: 74 RPDRIFKRAIRGMLPYKTEDGREAL 98
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 58.0 bits (134), Expect = 2e-07
Identities = 32/85 (37%), Positives = 53/85 (62%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 183
+LGRLA+++A+ L G +V +V E+ I+G+ N +K +L+K + +GPF+ +
Sbjct: 15 VLGRLASIVARNLKRGYRVKIVNAEKAIITGD--PNMVK-KEWLQKVKRGDYYKGPFYPK 71
Query: 184 APSKILWKTVRGMIPHKTERGKNAL 258
P IL + +RGM+P KT RG+ L
Sbjct: 72 RPDNILKRVIRGMLPRKTARGRELL 96
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 57.6 bits (133), Expect = 2e-07
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFRNKLKLMSFLRK----RCNVNPA 162
H+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK R + NP
Sbjct: 26 HVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEWRTHYNPE 82
Query: 163 R-GPFHFRAPSKILWKTVRGMIPHKTERGKNAL 258
+ GP R P ++ + VRGM+P K+E G++AL
Sbjct: 83 KAGPKVPRRPDRVFKRIVRGMLPKKSETGRSAL 115
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
+LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R GP+
Sbjct: 10 ILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGATEFGPYFP 66
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
+ P +IL +T+RGM+P+K RG++A+
Sbjct: 67 KRPDRILKRTIRGMLPYKRARGRDAM 92
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 56.4 bits (130), Expect = 5e-07
Identities = 28/84 (33%), Positives = 50/84 (59%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 183
++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++ G F+ +
Sbjct: 18 IMGRVASQVAEQALDGETVAVVNAERAVITGR----EEQIVEKYEKRVDIGNDNGYFYPK 73
Query: 184 APSKILWKTVRGMIPHKTERGKNA 255
P I +T+RGM+PHK +RG+ A
Sbjct: 74 RPDGIFKRTIRGMLPHKKQRGREA 97
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR-GPFHF 180
++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP + GP +
Sbjct: 10 VVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYP 69
Query: 181 RAPSKILWKTVRGMIPHKTERGKNA 255
R P I+ + +RGM+P+K RG A
Sbjct: 70 RRPDDIVRRVIRGMLPYKKPRGVEA 94
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 52.8 bits (121), Expect = 6e-06
Identities = 25/74 (33%), Positives = 43/74 (58%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 183
L+GRLA+ I +L +G + V+RC+ + SG + +++ + NP +GP+ F
Sbjct: 13 LIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRTNPNKGPYFFS 72
Query: 184 APSKILWKTVRGMI 225
PS +L K V+GM+
Sbjct: 73 NPSSLLKKIVKGML 86
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 50.0 bits (114), Expect = 4e-05
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Frame = +1
Query: 4 LLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR 165
+LGRLA+ IAK LL EG+ +V+++ E ++G ++++ L + RK +P +
Sbjct: 15 VLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP--KDRI-LADYDRKYKLNHPRK 71
Query: 166 GPFHFRAPSKILWKTVRGMIPH-KTERGKNAL 258
GPF R P IL +TVRGM+P+ K G+ A+
Sbjct: 72 GPFFPRMPDMILKRTVRGMLPYQKKSSGRQAV 103
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 49.6 bits (113), Expect = 6e-05
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR-GPFHF 180
+LGR+A+ + ++L EG KV++V E+ ISG R L + NP R G
Sbjct: 18 ILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPYRNGIRRP 77
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
R+P I+ +T+RGM+P K+ +G+ L
Sbjct: 78 RSPINIVKRTIRGMLP-KSSKGRRML 102
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/86 (29%), Positives = 46/86 (53%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+ GRL++ +AK LL G + +V ++ I+G R + + F R + +GP++
Sbjct: 9 HIYGRLSSYVAKKLLNGESITIVNASKVVITG---RKEFIIDKFNNLRNTGSIRKGPYYP 65
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
+ +IL +++ M+P K G AL
Sbjct: 66 KTADRILKRSIGDMLPKKKTHGMEAL 91
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 47.6 bits (108), Expect = 2e-04
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +3
Query: 384 SHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQSYGY 563
+HE+GW+Y+ +V KLE+KRK K +K ++ + A + + + + +++ YGY
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAKTAVYDKVLEQYGY 60
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 47.6 bits (108), Expect = 2e-04
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGN-FFRNKLKLMSFLRKRCNVNPARGPFHF 180
++GRLA+V+AK+LL G +V VV E+I +SG+ + + L + + + P
Sbjct: 19 IMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSHFSHKWRPKRP 78
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
R P ++ VRGM+P RG+ AL
Sbjct: 79 RTPQRLFKHAVRGMLPKNKARGRRAL 104
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 44.4 bits (100), Expect = 0.002
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR-GPFHF 180
+LGR++ IAK+L G KV VV E+ ISG R + NP R G
Sbjct: 16 ILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPYRQGIRRP 75
Query: 181 RAPSKILWKTVRGMIPHKTERGK 249
R P I+ +TVRGM+P K + GK
Sbjct: 76 RNPINIVKRTVRGMLP-KNKLGK 97
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 42.3 bits (95), Expect = 0.009
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 246 QECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 392
+ L RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 11 EAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42;
Lactobacillales|Rep: 50S ribosomal protein L13 -
Streptococcus mutans
Length = 148
Score = 36.7 bits (81), Expect = 0.43
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Frame = +1
Query: 7 LGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLMSFLRKRCN 150
LGRL+AV+A VL NK V+V+ E++ ++G NK+ +
Sbjct: 27 LGRLSAVVASVLRGKNKPTFTPHTDTGDFVIVINAEKVKLTGKKAANKIYYTHSMYPGGL 86
Query: 151 VNPARGPFHFRAPSKILWKTVRGMIPHKT 237
+ G + +++ K+V+GM+PH T
Sbjct: 87 KQISAGELRSKNAVRLIEKSVKGMLPHNT 115
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 35.1 bits (77), Expect = 1.3
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -2
Query: 251 FLPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQ 72
F R+ L FHR L+W+ R+G + + + +S S F+KK+P + SQ
Sbjct: 5 FSQRNSLAACSSSGCFHR-----LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGRVISQ 59
Query: 71 RTTTTLFPSRR 39
T+ P RR
Sbjct: 60 STSAFWLPFRR 70
>UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32;
Bacteria|Rep: 50S ribosomal protein L13 -
Prochlorococcus marinus (strain MIT 9313)
Length = 150
Score = 35.1 bits (77), Expect = 1.3
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Frame = +1
Query: 7 LGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLMSFLRKRCN 150
LGRLA +A VL NK VVVV ++I +SGN KL R
Sbjct: 26 LGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGM 85
Query: 151 VNPARGPFHFRAPSKILWKTVRGMIPH 231
R P +I+ K ++GM+PH
Sbjct: 86 KVETFQALQDRLPERIVEKAIKGMLPH 112
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 34.3 bits (75), Expect = 2.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 124 MSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNAL 258
+ + + NP+ GPF F P I TV+ ++P+K + + L
Sbjct: 6 LDLFHRPLDTNPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETL 50
>UniRef50_UPI0000E493E2 Cluster: PREDICTED: similar to kinesin,
putative, partial; n=14; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to kinesin, putative,
partial - Strongylocentrotus purpuratus
Length = 351
Score = 34.3 bits (75), Expect = 2.3
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 369 HVGRLSHEIGWKYRDVV---RKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFT 539
HV L+ +G K R+ +++E+ +KG+ R + EK+ + + D + +QHH
Sbjct: 68 HVDALTETVGEKERNETTLRQQVEELKKGREEDRSSAEKEKRSLAADMTKQLESKQHHVD 127
Query: 540 TIIQSYG 560
+ ++ G
Sbjct: 128 ALTETVG 134
>UniRef50_Q11R51 Cluster: Putative uncharacterized protein; n=1;
Cytophaga hutchinsonii ATCC 33406|Rep: Putative
uncharacterized protein - Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469)
Length = 833
Score = 34.3 bits (75), Expect = 2.3
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 448 RLLRELPMKRNLRGSPRMLVKGVEGXNTISLPSSNPMGTIRTKKLL 585
RLL L +R LR + L +G G N I P+G IRT++LL
Sbjct: 61 RLLPYLSYERKLRTAYLSLTRGDGGQNLIGKEQGEPLGLIRTQELL 106
>UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;
n=1; Cyanidium caldarium|Rep: Putative uncharacterized
protein rpl13 - Cyanidium caldarium
Length = 143
Score = 34.3 bits (75), Expect = 2.3
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 4 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF- 180
L+G+ + + + N V+++ Q+ I+GN +N K+ + +H
Sbjct: 37 LMGKNRSTYSYNSMSANFVIIINSRQVAITGN--KNTQKVYKRYSAKPGATKTESFYHLK 94
Query: 181 -RAPSKILWKTVRGMIPHKTERGK 249
R P++IL + V+GM+P K+ GK
Sbjct: 95 KRIPNRILEQAVKGMLP-KSVLGK 117
>UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage
Barnyard|Rep: Gp80 - Mycobacterium phage Barnyard
Length = 1111
Score = 33.5 bits (73), Expect = 4.0
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +3
Query: 348 KPGRNYCHVG-----RLSHEI--GWKYRDVVRKLEDKRKGKAVKRVAYEKKL 482
KP R C G +LS EI GWKYR R +RK + VKR+ YE K+
Sbjct: 296 KPLRFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKI 347
>UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1;
Tribolium castaneum|Rep: Gustatory receptor candidate 8
- Tribolium castaneum (Red flour beetle)
Length = 379
Score = 33.5 bits (73), Expect = 4.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 97 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWKTVRGMI 225
N+ + ++ +SF K CN+ P+ F P K LWK ++G++
Sbjct: 5 NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49
>UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large
ribosomal subunit; n=2; Ostreococcus|Rep: Plastid
ribosomal protein L13 large ribosomal subunit -
Ostreococcus lucimarinus CCE9901
Length = 218
Score = 32.7 bits (71), Expect = 7.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Frame = +1
Query: 7 LGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLMSFLRKR-- 144
LGRL+ V A L GN VVV+ ++I ++GN KL +R +
Sbjct: 84 LGRLSTVAATYLRGGNSGCYTPAFNMGVNVVVINADKIVVTGNKANQKLYYTLGVRGKPG 143
Query: 145 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGK 249
H R P++++ K ++GM+P K G+
Sbjct: 144 SMKEETYASLHARQPARVIEKAIKGMLP-KNRMGR 177
>UniRef50_UPI0000E4735E Cluster: PREDICTED: similar to pats1; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
pats1 - Strongylocentrotus purpuratus
Length = 1204
Score = 32.3 bits (70), Expect = 9.3
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 227 GIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLK--KLPEMLICSQRT 66
G +P +FHR++ A++W G R G + L R ISL + + L EML C + T
Sbjct: 940 GFLPDGLFHRLMTRAVRWMGERDGEPVILFYR-QISLMVDEEHHALLEMLPCHEAT 994
>UniRef50_Q8S473 Cluster: Putative RIRE2 orf3; n=1; Zea mays|Rep:
Putative RIRE2 orf3 - Zea mays (Maize)
Length = 863
Score = 32.3 bits (70), Expect = 9.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 375 GRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRR 524
G ++ E+GW + R ED G A + A EKK K+ + A R RRR
Sbjct: 161 GCVTLEVGWHKPSLPRVPEDAADGAARRVAAKEKKKKKDAEKARARERRR 210
>UniRef50_Q54I73 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1471
Score = 32.3 bits (70), Expect = 9.3
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 7 LGRLAAVIAKVLLEGNKVVVVRCE-QINISGNFFRNKLKLMSFLRKRCNVN 156
L LA +I VL+E N R E +I +S F N+ K +S RKR N N
Sbjct: 991 LDSLALIIGSVLIEAN--TCERSEFEIKVSSKAFENQFKYISEQRKRINDN 1039
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,138,669
Number of Sequences: 1657284
Number of extensions: 12743427
Number of successful extensions: 34168
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 32957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34114
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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