Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31030.Seq
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   135   4e-33
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   135   4e-33
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   132   3e-32
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.70 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   2.1  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   3.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.7  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.7  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    25   8.7  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  135 bits (327), Expect = 4e-33
 Identities = 61/86 (70%), Positives = 73/86 (84%)
 Frame = +1

Query: 1   HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
           HLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHF
Sbjct: 15  HLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHF 74

Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
           RAPS+I  K VRGM+PHKT RG+ AL
Sbjct: 75  RAPSRIFQKAVRGMLPHKTARGQAAL 100



 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 40/96 (41%), Positives = 51/96 (53%)
 Frame = +3

Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
           P +    Q  L  L+  +G PPPFD               LKPGR YC VGRLS E+GWK
Sbjct: 90  PHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWK 149

Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXR 512
           Y D+V KLE++RK K+     Y+ KL +  K A  +
Sbjct: 150 YSDIVSKLEERRKVKSA--AFYQAKLAKQKKIASAK 183


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  135 bits (327), Expect = 4e-33
 Identities = 61/86 (70%), Positives = 73/86 (84%)
 Frame = +1

Query: 1   HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
           HLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHF
Sbjct: 15  HLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHF 74

Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
           RAPS+I  K VRGM+PHKT RG+ AL
Sbjct: 75  RAPSRIFQKAVRGMLPHKTARGQAAL 100



 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 40/96 (41%), Positives = 51/96 (53%)
 Frame = +3

Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
           P +    Q  L  L+  +G PPPFD               LKPGR YC VGRLS E+GWK
Sbjct: 90  PHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWK 149

Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXR 512
           Y D+V KLE++RK K+     Y+ KL +  K A  +
Sbjct: 150 YNDIVAKLEERRKVKSA--AFYQAKLAKQKKIASAK 183


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  132 bits (320), Expect = 3e-32
 Identities = 59/86 (68%), Positives = 71/86 (82%)
 Frame = +1

Query: 1   HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
           HL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHF
Sbjct: 15  HLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHF 74

Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
           RAPS+I  K VRGM+PHKT RG  AL
Sbjct: 75  RAPSRIFTKAVRGMLPHKTTRGNIAL 100



 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 30/66 (45%), Positives = 41/66 (62%)
 Frame = +3

Query: 255 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 434
           L+ L+  +G PPPFD               LKP R YC +GRLS E+GWKY+++V KLE+
Sbjct: 100 LKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEE 159

Query: 435 KRKGKA 452
           +RK K+
Sbjct: 160 RRKIKS 165


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 105
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 378 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 500
           R S E   K  D   K E+KR+ K  K+   EKK K+  K+
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKE 468


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 185 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTLFPSRRTLAMTA 21
           AL+  G      ++L+R+ND +    +KK+ + LI  ++  T     R  L  T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 222 DPTQNRAWQECLRRL 266
           DP + R W+ C++RL
Sbjct: 610 DPAKRREWESCVKRL 624


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 109  NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 225
            N+ + MS   KRC     RG  HF    + L+  ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 231 QNRAWQECLRRLRTYDGCPPPF 296
           +N+ W   ++RL  YDG   P+
Sbjct: 113 RNKLWDRRMKRLYIYDGAEHPY 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,482
Number of Sequences: 5004
Number of extensions: 51545
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)