Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31030.Seq
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 127 6e-30
07_01_0071 - 522920-523063,524125-524212,524289-524677 125 2e-29
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 66 2e-11
11_04_0056 + 12942802-12942920,12943022-12943115 53 2e-07
04_03_0232 - 13049649-13052807 31 0.71
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 30 1.2
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 30 1.6
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 28 5.0
06_03_0220 + 18276641-18276915,18278445-18278676 28 5.0
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 28 6.7
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 28 6.7
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 6.7
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 6.7
07_01_1106 - 10187609-10190041,10190292-10191932 27 8.8
03_05_0092 - 20714102-20717902 27 8.8
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 127 bits (307), Expect = 6e-30
Identities = 56/86 (65%), Positives = 70/86 (81%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLRKR N P+ GP HF
Sbjct: 19 HMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 78
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
R+P+KILW+TVRGMIPHKT+RG+ AL
Sbjct: 79 RSPAKILWRTVRGMIPHKTKRGEAAL 104
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/91 (39%), Positives = 55/91 (60%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + + L RL+ Y+G PPP+D L+PG YC +G+LS E+GW
Sbjct: 94 PHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWN 153
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 497
Y D +R+LE+KRK KA +VAY+++ K++ K
Sbjct: 154 YYDTIRELEEKRKEKA--KVAYDRR-KQLAK 181
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 125 bits (302), Expect = 2e-29
Identities = 57/98 (58%), Positives = 70/98 (71%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLRKR N P+ GP HF
Sbjct: 19 HMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 78
Query: 181 RAPSKILWKTVRGMIPHKTERGKNALGGYVHMTGALLP 294
RAPS+I W+TVRGMIPHKT RG+ AL G P
Sbjct: 79 RAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPP 116
Score = 77.8 bits (183), Expect = 6e-15
Identities = 36/91 (39%), Positives = 54/91 (59%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + L L+ +DG PPP+D L+PG YC +G+LS E+GW
Sbjct: 94 PHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWN 153
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 497
Y D +R+LE+KRK KA +VAYE++ K++T+
Sbjct: 154 YHDTIRELEEKRKEKA--KVAYERR-KQLTR 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1
Query: 148 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNAL 258
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAAL 38
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + + L RL+ Y+ PP+D L+PG YC +G+LS E+GW
Sbjct: 28 PHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWN 87
Query: 405 YRDVVR 422
Y D +R
Sbjct: 88 YYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +3
Query: 246 QECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 407
+ L RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 11 EAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 450 PCPSSCLQAYEQHHGISIQFHGTVCLH 370
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +2
Query: 23 QSSPRSFSKGTKLLWFAANKSTSLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 202
Q+SP + +L WF N + S LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 203 GRL*E 217
GRL E
Sbjct: 624 GRLSE 628
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+ G+ A + G VVVV E++ +SG KL R
Sbjct: 559 HIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRRHSGRPGGMKEETFDQLQK 618
Query: 181 RAPSKILWKTVRGMIP 228
R P +I+ VRGM+P
Sbjct: 619 RIPERIIEHAVRGMLP 634
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = +1
Query: 448 RLLRELPMKRNLRGSPRMLVKGVEGXNTISLPSSNPMGTIRTKKLLPK*TFWLP 609
R++ EL + RN+R +P+ML++ ++ + + + + L+P F++P
Sbjct: 177 RIVEELGLARNVRLTPKMLIEAIKQRKDDPMAVRFFVMVLMSTLLIPTTDFYIP 230
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 231 QNRAWQECLRRLRTYDGCPPP 293
QNR CLR +R DG PPP
Sbjct: 20 QNRVRGNCLRWIRVGDGRPPP 40
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 193 KILWKTVRGMIPHKTERGKNALGGYVHMTGALLPLI 300
K+LW TV+G + KT + LG H G LL +I
Sbjct: 419 KLLWNTVKGFLDPKTASKIHVLGTKFH--GKLLEVI 452
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 15 SGGSHRQGPSRREQSCCGSLRTNQHL 92
SGG HR+ SRR G L TN+ L
Sbjct: 270 SGGEHRRKTSRRRSLIIGWLTTNKQL 295
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 19 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 129
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 369 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDAG 506
H G E G +VVR L D +GKAV+R+ +++L+ + + G
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLG 211
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 167 PRAGFTLHLLRRNDISLSLFLKKLPEMLIC 78
P G +LH+L ++S L+ LP+ L+C
Sbjct: 375 PSLGSSLHMLSALNLSCCYSLRALPDSLVC 404
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 298 SKGGGHPSYVRSLLRHSCHALFCVGSCLLQ 209
SK G S + +L H CH L +GS LLQ
Sbjct: 988 SKEGRWTSRLTTLQIHQCHGLKSLGSSLLQ 1017
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,807,220
Number of Sequences: 37544
Number of extensions: 370935
Number of successful extensions: 969
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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