Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31030.Seq
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)                 29   3.9  
SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)                   29   3.9  
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)                 29   3.9  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   5.1  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  28   5.1  
SB_55280| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              28   6.8  
SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 225 PTQNRAWQECLRRLRTYDGCPPPFD 299
           P + +   E + R++ +DG PPP+D
Sbjct: 3   PHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 49  GNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIP 228
           G+ VVV+  + I +SG  + NKL                   H +  ++ILW+ V GM+P
Sbjct: 54  GDYVVVINTKHIVLSGTKWDNKLYRHHTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP 113

Query: 229 HKTER 243
               R
Sbjct: 114 KNNLR 118


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 385  PMKLDGNTVMLFVSLKTRGRARLL--RELPMKRNLRGSPRMLVKGV 516
            P K +GNT    V ++  GR + L  R +P++ N  G P+ LVK +
Sbjct: 1114 PGKAEGNTDKRIVPVENNGRIKQLDKRIIPVENN--GRPKQLVKRI 1157


>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
          Length = 622

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 351 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 467
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445


>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
          Length = 271

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 342 CLKPGRNYCHVGRL---SHEIGWKYRDVVRKL--EDKRKGKAVKRVAYEKKLKRITKDAG 506
           C KPG+++ HV  +    H    ++ D  R +  +   K  A+K  +Y  KLK + +D G
Sbjct: 106 CYKPGQDFLHVVHVLNRPHIFSSRHHDAYRAIIHDVNEKANALKD-SYISKLKALVQDEG 164


>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
          Length = 1266

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 351 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 467
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 866 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 904


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 203 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 60
           H +   AL+W+G R  FTL +   + + LS  + K  + + C   ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 387 HEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQ 551
           HE   KYRD    LED R     +   ++K++ ++  +   + R  ++H   I+Q
Sbjct: 302 HEAEKKYRDQQTTLEDLRLDHEEETRKFKKEIAKLEDNERSKTRLLEYHKHEILQ 356


>SB_55280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 578 FLVLIVPIGLDDGSEMVLXPSTP 510
           F+VL+VPI L D  EMV  PS P
Sbjct: 295 FIVLVVPIILIDVIEMVGGPSAP 317


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 357  RNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQ 527
            R Y H G  SHE   + R   RK   KRK +  ++   ++K +R  K    R RRR+
Sbjct: 1021 RTYRHAG--SHERRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1075


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 164 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 54
           R G+   + + ++ ++ LFL   PE++    R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167


>SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 417 VRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQSYGYN 566
           VRK   +RKG+ V++V  E+K ++  K+   R  R+      +I  Y ++
Sbjct: 75  VRKGRKERKGRKVRKVRKERKGRKGRKERKVRKERKPASHYGLISVYKHS 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,113,008
Number of Sequences: 59808
Number of extensions: 421547
Number of successful extensions: 1726
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)