Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31030.Seq
         (609 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     25   1.4  
AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative acetyltr...    23   5.8  
AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative 5'-nucleo...    23   7.7  

>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHH 533
           Y + V  + DK       R+A ++ +K + K+    C+   HH
Sbjct: 239 YGNTVVAVADKLSDMYWLRIAQDRVMKSVVKEHTKNCQHTWHH 281


>AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative
           acetyltransferase protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 213 KRHDPTQNRAWQECLRRLRTYDGCPPPFDN 302
           +  D    + +  C +R+  YDG PPP  N
Sbjct: 208 EEEDDDTYQDYYSCKKRI-AYDGPPPPTSN 236


>AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative
           5'-nucleotidase protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 440 PLVFKLTNNITVFPSNFMGQSAYMTVITARFQTE 339
           PLV K +NN TV  +       Y+  +T  F  E
Sbjct: 279 PLVVKKSNNHTVLITQARSFGKYVGRLTVNFDCE 312


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,751
Number of Sequences: 2352
Number of extensions: 13408
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)