Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31030.Seq
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 143 1e-34
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 143 1e-34
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 30 1.5
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 29 3.4
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr... 28 4.5
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 7.9
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 143 bits (346), Expect = 1e-34
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRKRCN+NPARG FH+
Sbjct: 15 HLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHY 74
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAP KI W+TVRGM+PHKT RG AL
Sbjct: 75 RAPGKIFWRTVRGMLPHKTNRGNEAL 100
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/114 (35%), Positives = 58/114 (50%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + E L+ LR Y+G P + F L+P R +C VGRLSHE+GW+
Sbjct: 90 PHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQ 148
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQSYGYN 566
++DVV KLE KRK K +KK+ ++ A + + II++ GYN
Sbjct: 149 FQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 143 bits (346), Expect = 1e-34
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRKRCN+NPARG FH+
Sbjct: 15 HLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHY 74
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAP KI W+TVRGM+PHKT RG AL
Sbjct: 75 RAPGKIFWRTVRGMLPHKTNRGNEAL 100
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/114 (35%), Positives = 58/114 (50%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + E L+ LR Y+G P + F L+P R +C VGRLSHE+GW+
Sbjct: 90 PHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQ 148
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGXRCRRRQHHFTTIIQSYGYN 566
++DVV KLE KRK K +KK+ ++ A + + II++ GYN
Sbjct: 149 FQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202
>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
protein T04G9.1 protein.
Length = 1610
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 198 SMEDCKRHDPTQNR-AWQECLRRLRTYDGCPPP 293
+M + RH PT R A LR+ R DGCP P
Sbjct: 402 AMAEFTRHTPTGTRSATPNILRKNRNTDGCPSP 434
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 468 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 358
R+ S C S L +E HHGI + G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 450 PCPSSCLQAYEQHHGISIQFHGTVCLHD 367
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 360 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKD 500
+YC G+ S H I WKYRD V ++ K K A++ R A E K I D
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHD 331
>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
protein D1044.6 protein.
Length = 1009
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +3
Query: 420 RKLEDK-RKGKAVKRVAYEKKLKRITKDAGXRCRRRQ 527
R++ED+ RK ++R+A EKK K++ +D +CR +Q
Sbjct: 422 RQIEDEARKRDELQRIAEEKKRKQLLED---QCRAKQ 455
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 425 LTNNITVFPSNFMGQSAYMTVITARFQTE 339
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,593,943
Number of Sequences: 27780
Number of extensions: 303751
Number of successful extensions: 873
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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