Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31030.Seq
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   3.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.4  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 107 LKKLPEMLICSQRTTTTLFPSRRTL 33
           LK L + L+C ++ +TT+ P+ + +
Sbjct: 68  LKLLSDGLMCVEKVSTTIVPTTQEI 92


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 483 KRITKDAGXRCRRRQHHFTTIIQSY 557
           K+I K +G R  R   H+T   Q+Y
Sbjct: 211 KKIPKSSGWRKLRNIVHWTPFFQTY 235


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 572 LRNYYQNKPFGC 607
           LRN++ +KPF C
Sbjct: 8   LRNHFGSKPFKC 19


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -2

Query: 239 SVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLF 108
           SV+C +    VFH      + W      F       ++I+ SLF
Sbjct: 164 SVVCSLPQTIVFHLETHPNVTWYSQCVTFNAFPTYTHEITYSLF 207


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = -2

Query: 608 GNQKVYFGNNFLVLIVPIGLDDGSEMVLXPSTPXTSILGDPLKFLFIGNSLNSLALPLVF 429
           GN     GN + +    +   D S   +   +P +  + D ++ LFI N+  +L  P  F
Sbjct: 580 GNFIESLGNYYKIRDSKVKTLDASHNRITELSPLS--VPDSVELLFINNNYINLVRPNTF 637

Query: 428 KLTNNIT 408
               N+T
Sbjct: 638 TDKVNLT 644


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 157 PARGPFHFRAPSKI 198
           P  G F F+AP KI
Sbjct: 56  PPVGKFRFKAPQKI 69


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 252 ILATLCFVWDHASYSLP*NLRWSSKMERSTSRIHVAPLT 136
           +  TL  VW    + +   ++W+ K+   TS    A LT
Sbjct: 209 LAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFPYALLT 247


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 252 ILATLCFVWDHASYSLP*NLRWSSKMERSTSRIHVAPLT 136
           +  TL  VW    + +   ++W+ K+   TS    A LT
Sbjct: 262 LAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFPYALLT 300


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 157 PARGPFHFRAPSKI 198
           P  G F F+AP KI
Sbjct: 56  PPVGKFRFKAPQKI 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,409
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)