Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31030.Seq
(609 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 130 5e-31
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 128 4e-30
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 126 1e-29
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 124 5e-29
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 30 1.0
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 29 2.4
At1g45190.1 68414.m05182 expressed protein Since this genomic se... 29 3.2
At5g19400.1 68418.m02312 expressed protein 28 4.2
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 28 4.2
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 5.6
At5g49290.1 68418.m06100 leucine-rich repeat family protein cont... 27 7.4
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 130 bits (315), Expect = 5e-31
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGRLA+V+AK LL G +VVVRCE+I +SG R K+K M FLRKR N P+ GP HF
Sbjct: 19 HMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHF 78
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAPSKI W+TVRGMIPHKT+RG NAL
Sbjct: 79 RAPSKIFWRTVRGMIPHKTKRGANAL 104
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/91 (34%), Positives = 51/91 (56%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + L RL+ ++G P P+D L+ G YC +GRLS E+GW
Sbjct: 94 PHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWN 153
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 497
+ D +++LE+KRK +A + YE+K K+++K
Sbjct: 154 HYDTIKELENKRKERA--QAVYERK-KQLSK 181
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 128 bits (308), Expect = 4e-30
Identities = 57/86 (66%), Positives = 67/86 (77%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGRLA++ AK LL G KVV+VRCE+I +SG R K+K M FLRKR N P+ GP HF
Sbjct: 19 HMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHF 78
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAPSKI W+TVRGMIPHKT+RG AL
Sbjct: 79 RAPSKIFWRTVRGMIPHKTKRGAAAL 104
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/91 (36%), Positives = 49/91 (53%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + L RL+ Y+G P P+D L+ G YC +GRLS E+GW
Sbjct: 94 PHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWN 153
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 497
+ D +++LE KRK +A V YE+K K++ K
Sbjct: 154 HYDTIKELETKRKERA--HVVYERK-KQLNK 181
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 126 bits (304), Expect = 1e-29
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+ GRLA++IAK LL G VVVVRCE+I +SG R K+K M FLRKR N P+ GP HF
Sbjct: 19 HMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHF 78
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAPSKI W+TVRGMIPHKT+RG AL
Sbjct: 79 RAPSKIFWRTVRGMIPHKTKRGAAAL 104
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/91 (35%), Positives = 51/91 (56%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + L RL+ ++G PPP+D L+ G YC +GRLS E+GW
Sbjct: 94 PHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWN 153
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 497
+ D +++LE KRK ++ + YE+K K++TK
Sbjct: 154 HYDTIKELEVKRKERS--QALYERK-KQLTK 181
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 124 bits (299), Expect = 5e-29
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+LGRLA+ AK LL G +VVVVRCE+I +SG R K+K M FLRKR N P+ GP HF
Sbjct: 19 HMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHF 78
Query: 181 RAPSKILWKTVRGMIPHKTERGKNAL 258
RAPSKI W+TVRGMIPHKT+RG AL
Sbjct: 79 RAPSKIFWRTVRGMIPHKTKRGAAAL 104
Score = 67.3 bits (157), Expect = 7e-12
Identities = 32/91 (35%), Positives = 51/91 (56%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 404
P + + L RL+ ++G PPP+D L+ G YC +GRLS E+GW
Sbjct: 94 PHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWN 153
Query: 405 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 497
+ D +++LE KRK ++ +V YE+K K++ K
Sbjct: 154 HYDTIKELETKRKERS--QVMYERK-KQLNK 181
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -2
Query: 260 PKAFLPRSVLCG-IMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEM 87
P LP +V ++ L + H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 642 PMTCLPSTVNVEFLIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 64 VVRCEQINISGNFF-RNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGM 222
V C Q+ + + R K+ + L +R N+ P+R +HF SK L + GM
Sbjct: 277 VFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330
>At1g45190.1 68414.m05182 expressed protein Since this genomic
sequence region is unfinished, the annotated gene may be
missing a stop codon or start codon
Length = 172
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 225 PTQNRAWQECLRRLRTYDGCPPPFD 299
P +AW EC+RR+ + G P F+
Sbjct: 147 PKSKQAWNECIRRVGSKIGAPVSFE 171
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -2
Query: 497 LGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 318
L P F F G + + + F N NF+ ++ T + ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057
Query: 317 YNTSTV 300
++T+ V
Sbjct: 1058 FDTAHV 1063
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = +1
Query: 1 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 180
H+ G+ A + G V+VV E++ +SG KL R
Sbjct: 125 HIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQ 184
Query: 181 RAPSKILWKTVRGMIP 228
R P +I+ VRGM+P
Sbjct: 185 RIPERIVEHAVRGMLP 200
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 485 EDHQGCWXKVSKAXTPFHYHHPILWVQLGLRNY 583
E H+GC + + PFH HP+ ++ L L +
Sbjct: 63 EFHRGCHIFLPEIRHPFHPSHPLTFISLLLPKF 95
>At5g49290.1 68418.m06100 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 888
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -2
Query: 575 LVLIVPIGLDDGSEMVLXPSTPXTSILGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPS 396
L+ +V + + D S L P ++ + L FL + +L S ALP L N + + +
Sbjct: 487 LLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNVLFLHNN 546
Query: 395 NFMG 384
NF G
Sbjct: 547 NFTG 550
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,990,188
Number of Sequences: 28952
Number of extensions: 289162
Number of successful extensions: 863
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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