Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31029.Seq
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 139 4e-32
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 129 6e-29
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 126 4e-28
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 121 1e-26
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 95 8e-19
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 91 1e-17
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 90 4e-17
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 81 3e-14
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 80 4e-14
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 73 7e-12
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 59 9e-08
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 57 3e-07
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 52 1e-05
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 49 7e-05
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 47 3e-04
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 44 0.004
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 43 0.006
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 42 0.011
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 39 0.078
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 38 0.18
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 35 1.7
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 34 2.2
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 34 2.9
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 33 3.9
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 33 5.1
UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;... 33 6.7
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 33 6.7
UniRef50_Q0UX26 Cluster: Putative uncharacterized protein; n=2; ... 32 8.9
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 139 bits (337), Expect = 4e-32
Identities = 86/191 (45%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
+R L L +G F+ + VYNASNN LVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 352 ESHYTLPLGRKXGAKLXXAXEAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWL 531
ESHY LPLGRK GAKL E I NKKRS K +KY R++ AK+ LE Q QG
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 532 AWRVAXGQCGR 564
GQCGR
Sbjct: 174 CIASRPGQCGR 184
Score = 121 bits (291), Expect = 1e-26
Identities = 54/66 (81%), Positives = 58/66 (87%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GKR P KKRKYEL RPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 239 TRIIDV 256
TRIIDV
Sbjct: 76 TRIIDV 81
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 129 bits (311), Expect = 6e-29
Identities = 63/103 (61%), Positives = 71/103 (68%)
Frame = +1
Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLXXAXEAIXNKKR 435
VYNASNN LVRTKTLVKN IV++D+TP+RQWYESHY LPLGRK GAKL E I NKKR
Sbjct: 62 VYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR 121
Query: 436 SXKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGR 564
S K +KY R++ AK+ LE Q QG GQCGR
Sbjct: 122 SKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGR 164
Score = 64.9 bits (151), Expect = 1e-09
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTK 175
GKR P KKRKYEL RPAANT++GP+RIH+VR RGG T+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 126 bits (304), Expect = 4e-28
Identities = 88/194 (45%), Positives = 103/194 (53%), Gaps = 10/194 (5%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANP-LRSFTWWKY*VPCAA 189
MGISRD HKRRATG + + ++ + RP+AN L S K
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKF--------ELGRPAANTKLGSGRVHKVRTRGGN 52
Query: 190 SGHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQW 348
+ R L L G F + VYNASNN LVRTKTLVKN+IVV+DATPFRQW
Sbjct: 53 TKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQW 112
Query: 349 YESHYTLPLGRKXGAKLXXAXEA--IXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGV 522
YE+HY LPLGRK K + + KKRS K +KYL RQ+ KVE ALE Q T G
Sbjct: 113 YEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGR 172
Query: 523 CWLAWRVAXGQCGR 564
GQCGR
Sbjct: 173 ILACISSRPGQCGR 186
Score = 103 bits (246), Expect = 4e-21
Identities = 47/66 (71%), Positives = 54/66 (81%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GKR +RKKRK+EL RPAANT+LG R+H VR+RGGNTK RALRL+TGNF+W SE RK
Sbjct: 16 GKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARK 75
Query: 239 TRIIDV 256
TRI DV
Sbjct: 76 TRIADV 81
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 121 bits (291), Expect = 1e-26
Identities = 54/66 (81%), Positives = 58/66 (87%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GKR P KKRKYEL RPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 239 TRIIDV 256
TRIIDV
Sbjct: 76 TRIIDV 81
Score = 120 bits (288), Expect = 3e-26
Identities = 73/156 (46%), Positives = 90/156 (57%), Gaps = 7/156 (4%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
+R L L +G F+ + VYNASNN LVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 352 ESHYTLPLGRKXGAKLXXAXEAIXNKKRSXKTARKY 459
ESHY LPLGRK GAKL E I NKKRS K +KY
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 95.5 bits (227), Expect = 8e-19
Identities = 43/67 (64%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 GKRAPI-RKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
G R P+ +KKRKYEL RP++NT+LG + + VR RGGN K+RALRLD+GNFSWGS+ TR
Sbjct: 15 GGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTR 74
Query: 236 KTRIIDV 256
KTR++DV
Sbjct: 75 KTRVMDV 81
Score = 76.2 bits (179), Expect = 6e-13
Identities = 57/132 (43%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
MGISRD HKRR TG H ++ + RPS+N + V C
Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKY--------ELGRPSSNTKLGSKLVRK-VRCRGG 51
Query: 193 G--HR*LLLGIGMFN--SQNPYH*C-----VYNASNNXLVRTKTLVKNAIVVVDATPFRQ 345
R L L G F+ SQN VYNAS+N LVRTKTLVKNAIV VD TPF+
Sbjct: 52 NLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKL 111
Query: 346 WYESHYTLPLGR 381
W+++HY L LG+
Sbjct: 112 WFKTHYGLELGK 123
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 91.5 bits (217), Expect = 1e-17
Identities = 44/67 (65%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
GK+ RKKRKYEL R ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 236 KTRIIDV 256
KTRI+DV
Sbjct: 76 KTRILDV 82
Score = 79.0 bits (186), Expect = 8e-14
Identities = 71/199 (35%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
MGISRD HKRRATG + A ++ + R + S+N T + V
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKY--ELGRQPANTKLSSNK----TVRRVRVRGGNV 54
Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
R L L G ++ + VYNASNN LVRT+TLVK+AIV VDA PF+QWY
Sbjct: 55 KWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWY 114
Query: 352 ESHYTLPLGRK---XGAKLXXA-----XEAIXNKKRSXKTARKYLARQRLAKVEGALEXQ 507
+HY + +GRK AK A A K+S RK R+ ++ +E Q
Sbjct: 115 LTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQ 174
Query: 508 STQGVCWLAWRVAXGQCGR 564
G GQCGR
Sbjct: 175 FGSGRLLACISSRPGQCGR 193
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 89.8 bits (213), Expect = 4e-17
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +2
Query: 62 KRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 241
KR+ RKKR +E R ANTR+GP+RIH VR+RGGN K+R LRL++GNFSWGSE RK
Sbjct: 17 KRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRLESGNFSWGSEGIARKV 76
Query: 242 RIIDV 256
R+I V
Sbjct: 77 RVIVV 81
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 80.6 bits (190), Expect = 3e-14
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
G P+++++ YEL R ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 236 KTRIIDV 256
KTRI+DV
Sbjct: 173 KTRILDV 179
Score = 65.7 bits (153), Expect = 8e-10
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +1
Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 384
VY A+NN LVRT+TLVK+AIV VDA PF+QWY +HY + +GRK
Sbjct: 180 VYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRK 222
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 79.8 bits (188), Expect = 4e-14
Identities = 38/66 (57%), Positives = 46/66 (69%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GK RK+ K EL R ANTRLG +R+ VR+RGGN K RALRLDTGNF+W SE +
Sbjct: 16 GKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRLDTGNFAWASEAIAHR 75
Query: 239 TRIIDV 256
R++DV
Sbjct: 76 VRLLDV 81
Score = 72.1 bits (169), Expect = 9e-12
Identities = 49/126 (38%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Frame = +1
Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLPL-GRKXGAKLXXAXEAIXNK- 429
VYNA++N LVRTKTLVKN IV VDA PF++WY HY + L K K A E K
Sbjct: 82 VYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDLDADKKSTKAAVAAEKKGRKS 141
Query: 430 -----------KRSXKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGRGRWL 576
K S K R++ R+R +VE A+ Q +G GQ GR +
Sbjct: 142 AHAAADKYDVNKASPKLQREWTRRRRNHRVEKAIADQLREGRVLARITSRPGQSGRADGI 201
Query: 577 HLRXAK 594
L A+
Sbjct: 202 LLEGAE 207
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 72.5 bits (170), Expect = 7e-12
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GK+ ++KK+K + R ANTRLG R+H VR R G K RALRL+ GNFSW S+ T+
Sbjct: 16 GKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLENGNFSWASQSITKG 75
Query: 239 TRIIDV 256
T+I++V
Sbjct: 76 TKILNV 81
Score = 49.6 bits (113), Expect = 5e-05
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +1
Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHY 363
VYNAS+N VRT TLVK AI+ +D PFR W+ Y
Sbjct: 82 VYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFY 117
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 58.8 bits (136), Expect = 9e-08
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Frame = +2
Query: 80 KKRKYELXRPAANTRL---------GPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECST 232
KKRKY L R ANT+L Q+I ++R RGGN K RALRL G+F+WGS +
Sbjct: 23 KKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNIKRRALRLSHGSFAWGSADIS 82
Query: 233 RKTRIIDV 256
K RI+ V
Sbjct: 83 HKARILQV 90
Score = 40.7 bits (91), Expect = 0.025
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +1
Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFR 342
VYN+++N LVRT TLVK +V +D+ PF+
Sbjct: 91 VYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 57.2 bits (132), Expect = 3e-07
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = +2
Query: 50 PPAGKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS 229
P GK P KR+YEL R TRLG + + +RS GGN+K+ LR D N + +
Sbjct: 12 PSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKDKT 71
Query: 230 TRKTRI 247
TRK +I
Sbjct: 72 TRKVKI 77
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 51.6 bits (118), Expect = 1e-05
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 GKRAPI-RKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
G +A I RKKR ++T++G +++ VR RGGN KY+ALRLD G+F + + R
Sbjct: 15 GAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRLDMGHFKFITTGKFR 74
Query: 236 KTRIIDV 256
+++ V
Sbjct: 75 MAKLLQV 81
Score = 36.7 bits (81), Expect = 0.41
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFR 342
VY+ S+N LVRT TL K+++V + A PF+
Sbjct: 82 VYHPSSNELVRTNTLTKSSVVKISAEPFK 110
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 49.2 bits (112), Expect = 7e-05
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
G ++ RKKR + R +NT++G + + +R RGG K RAL L GNFS+ S T K
Sbjct: 16 GLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFLSYGNFSFVSIQRTFK 75
Query: 239 TRIIDV 256
+I+ V
Sbjct: 76 AKILSV 81
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 47.2 bits (107), Expect = 3e-04
Identities = 25/66 (37%), Positives = 37/66 (56%)
Frame = +2
Query: 50 PPAGKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS 229
P G+ + K++ E+ R A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 11 PSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPATGE 70
Query: 230 TRKTRI 247
T+KT+I
Sbjct: 71 TKKTKI 76
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 43.6 bits (98), Expect = 0.004
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
GK+ I KK+ + NT L I R RGGN K++A+ L G+F W + ++
Sbjct: 9 GKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWKTMQLSK 68
Query: 236 KTRIIDVCIMHLTMXWCVQRPLSR 307
++I+ V + +R LS+
Sbjct: 69 NSKILSVLYNQANLKLVQKRNLSK 92
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 42.7 bits (96), Expect = 0.006
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 RKKRKYELXRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIID 253
RKKR++EL R T+LG + V R+ GGNTK +T N SE +K +II
Sbjct: 21 RKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDASEKKIKKAKIIT 80
Query: 254 V 256
V
Sbjct: 81 V 81
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 41.9 bits (94), Expect = 0.011
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Frame = +1
Query: 304 KNAIVVVDATPFRQWYESHYTLPLGR-----KXGAKL--XXAXEAIXNKKRSXKTARKYL 462
K+AIV + PFRQW+E+ Y LG K G + E KKRS +K+
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPKVVCKKGPSVTPENPEEDFLLKKRSKSALKKFE 60
Query: 463 ARQRL--AKVEGALEXQSTQGVCWLAWRVAXGQCGR 564
RQ L A VE +L+ + G GQ GR
Sbjct: 61 TRQALPQANVEESLKEEFVTGRLLACISSKPGQVGR 96
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 39.1 bits (87), Expect = 0.078
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 50 PPAGKRAPIRKKRKYELXRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGSEC 226
P G+ RKKRK EL R +NTR+ Q + +R+ GGN K R N +
Sbjct: 12 PSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDKSG 70
Query: 227 STRKTRIIDV 256
RK RII V
Sbjct: 71 KGRKVRIIRV 80
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 37.9 bits (84), Expect = 0.18
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 50 PPAGKRAPIRKKRKYELXRPAANTRLGPQR-IHSVRSRGGNTK 175
P G+ P RKKRK+E+ P T +G +R + R GGN K
Sbjct: 12 PTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK 54
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 34.7 bits (76), Expect = 1.7
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
G + R KRKYE+ P T L + I R+ GGN K R T N + + +
Sbjct: 15 GLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAK 74
Query: 236 KTRIIDV 256
K +I+++
Sbjct: 75 KVKILEI 81
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 34.3 bits (75), Expect = 2.2
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 29 ITGISEGPPAGKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGN 205
+ G+ G AG+R P+R++ + E RP A+ R P H+ R+R G R L + +
Sbjct: 2 VDGLCRGL-AGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARR 59
Query: 206 FSWGSECSTRKTRIIDV 256
F + S S ++ I V
Sbjct: 60 FRYRSGSSRHASQAIPV 76
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 33.9 bits (74), Expect = 2.9
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
G+R P+R +RKYE+ R G Q + + RG TK +D N + +K
Sbjct: 16 GRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGAKVKK 74
Query: 239 TRIIDV 256
++I+ V
Sbjct: 75 SKIVKV 80
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 33.5 bits (73), Expect = 3.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 62 KRAPIRKKRKYELXRPAANTRLGPQRIHSVRSR 160
+RAP K YE R AA TRL P + ++R R
Sbjct: 272 ERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 33.1 bits (72), Expect = 5.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 77 RKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDV 256
R KRK+EL R +G Q++ + G +K R L+ D N + T+K ++ V
Sbjct: 20 RSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKTGKTQKVKMTTV 79
>UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;
Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
precursor - Sphingomonas wittichii RW1
Length = 803
Score = 32.7 bits (71), Expect = 6.7
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +3
Query: 60 GNVRPYARRGSMSXGVPLQTPGSALSESTPFVHVVEILSTVR-CVWTPVTSLGDR 221
GN Y G P GS L P + + STV+ WTP+ SL R
Sbjct: 499 GNANQYVVEAGFLTGAPFNPDGSGLQNGDPLMGPLGQRSTVKDTAWTPMASLSYR 553
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 32.7 bits (71), Expect = 6.7
Identities = 27/80 (33%), Positives = 38/80 (47%)
Frame = +1
Query: 280 LVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLXXAXEAIXNKKRSXKTARKY 459
LVRT+TLVKNAI+ Q Y HY L +G K A + +++ RK
Sbjct: 32 LVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTTPRKK----ERKGNHVVRKL 79
Query: 460 LARQRLAKVEGALEXQSTQG 519
RQ+ K++ +E Q G
Sbjct: 80 EKRQQDHKLDPHIEEQFGSG 99
>UniRef50_Q0UX26 Cluster: Putative uncharacterized protein; n=2;
Pezizomycotina|Rep: Putative uncharacterized protein -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1479
Score = 32.3 bits (70), Expect = 8.9
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 412 EAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGRGRWL 576
E I KK + KTAR RQ+ A +E ++T+ V W W +A + G G W+
Sbjct: 861 EVIDGKKEAKKTAR----RQKKAVALMQVEDRATKSVSWGVW-IAYIKAGGGIWV 910
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,893,348
Number of Sequences: 1657284
Number of extensions: 11018108
Number of successful extensions: 27882
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 27006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27862
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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