Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31029.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   100   1e-22
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   100   1e-22
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    30   0.29 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   2.7  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.3  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  100 bits (240), Expect = 1e-22
 Identities = 46/65 (70%), Positives = 54/65 (83%)
 Frame = +2

Query: 62  KRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 241
           KRA  RKKRK+EL R  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 242 RIIDV 256
           RII V
Sbjct: 77  RIIQV 81



 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 46/102 (45%), Positives = 57/102 (55%)
 Frame = +1

Query: 259 YNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLXXAXEAIXNKKRS 438
           Y+ SNN LVRT TL K+AIV +DA PFR WYE+HY + +G K G K      +  N K S
Sbjct: 83  YHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGSK-GKK----ATSTPNPK-S 136

Query: 439 XKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGR 564
               RK+ AR   +KV+ ALE Q   G  +       GQ GR
Sbjct: 137 KHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGR 178


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  100 bits (240), Expect = 1e-22
 Identities = 46/65 (70%), Positives = 54/65 (83%)
 Frame = +2

Query: 62  KRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 241
           KRA  RKKRK+EL R  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 242 RIIDV 256
           RII V
Sbjct: 77  RIIQV 81



 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 44/102 (43%), Positives = 55/102 (53%)
 Frame = +1

Query: 259 YNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLXXAXEAIXNKKRS 438
           Y+ SNN LVRT TL K+AIV +DA PFR WYE+HY + +G K G K            +S
Sbjct: 83  YHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGSK-GKKATATP-----TPKS 136

Query: 439 XKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGR 564
               RK+ AR   +KV+ ALE Q   G  +       GQ GR
Sbjct: 137 KHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGR 178


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 41  SEGPPAGKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALR 190
           S+G    K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 35  SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 95   ELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 247
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 347 HCLNGVASTTTIAFLTRVFVRTNXLLDALYTHQ 249
           H    + ST     L R+FV+ N +L  LY H+
Sbjct: 318 HGAKYMTSTEVRNHLRRLFVKENVVLSRLYAHK 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,008
Number of Sequences: 5004
Number of extensions: 43340
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)