Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31029.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365...    91   5e-19
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607...    91   6e-19
01_06_0657 - 30940020-30940034,30940226-30940861                       29   3.7  
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    28   4.9  
04_03_0549 - 17043135-17043351,17043641-17043846                       27   8.6  

>02_03_0270 +
           17135464-17135467,17135583-17135655,17136253-17136583,
           17136916-17136969,17137219-17137394,17137607-17137685
          Length = 238

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 44/67 (65%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
 Frame = +2

Query: 59  GKRAPIRKKRKYELXRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
           GK+   RKKRKYEL R  ANT+L   + +  VR RGGN K+RALRLDTGN+SWGSE  TR
Sbjct: 16  GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75

Query: 236 KTRIIDV 256
           KTRI+DV
Sbjct: 76  KTRILDV 82



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 55/134 (41%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
 Frame = +1

Query: 13  MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
           MGISRD  HKRRATG +  A  ++ +      R     + S+N     T  +  V     
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKY--ELGRQPANTKLSSNK----TVRRVRVRGGNV 54

Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
             R L L  G ++        +      VYNASNN LVRT+TLVK+AIV VDA PF+QWY
Sbjct: 55  KWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWY 114

Query: 352 ESHYTLPLGRKXGA 393
            +HY + +GRK  A
Sbjct: 115 LTHYGVDIGRKKKA 128


>04_03_0510 -
           16659486-16659564,16659772-16659947,16660464-16660797,
           16661564-16661636,16661780-16661783
          Length = 221

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 44/67 (65%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
 Frame = +2

Query: 59  GKRAPIRKKRKYELXRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
           GK+   RKKRKYEL R  ANT+L   + +  VR RGGN K+RALRLDTGN+SWGSE  TR
Sbjct: 16  GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTR 75

Query: 236 KTRIIDV 256
           KTRI+DV
Sbjct: 76  KTRILDV 82



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 72/199 (36%), Positives = 93/199 (46%), Gaps = 15/199 (7%)
 Frame = +1

Query: 13  MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
           MGISRD  HKRRATG +  A  ++ +      R     + S+N     T  +  V     
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKY--ELGRQPANTKLSSNK----TVRRVRVRGGNL 54

Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
             R L L  G ++        +      VYNASNN LVRT+TLVK+AIV VDA PF+QWY
Sbjct: 55  KWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWY 114

Query: 352 ESHYTLPLGRK---XGAKLXXA-----XEAIXNKKRSXKTARKYLARQRLAKVEGALEXQ 507
            +HY + +GRK     AK   A       A    K+S    RK   RQ+   ++  +E Q
Sbjct: 115 LTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQ 174

Query: 508 STQGVCWLAWRVAXGQCGR 564
              G          GQCGR
Sbjct: 175 FGSGRLLACISSRPGQCGR 193


>01_06_0657 - 30940020-30940034,30940226-30940861
          Length = 216

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 27  GSLA*AKGHRLGNVRPYARRGSMSXGVPLQTPGSALSES 143
           G++  A G+R+    P  R GSMS G  +   GS++S S
Sbjct: 117 GTIGAAAGNRMRGFVPPGRGGSMSNGAGVVGHGSSMSHS 155


>03_05_0936 -
           28955486-28955683,28956320-28956424,28956550-28956693,
           28957078-28957356,28957480-28957587,28958288-28958567,
           28958724-28960029,28961301-28962342
          Length = 1153

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +2

Query: 8   LRWVLVGITGISEGPPAGKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRAL 187
           LR  L G    S GP   +R     K   E     A +  GP+   SVRS   + ++   
Sbjct: 24  LRGELNGRGDASNGPTVQRRVA-EPKEDDEQDGSEAGSNAGPRGAASVRSADSSREFIVK 82

Query: 188 RLDTGNFSWGSE 223
            +D G    GS+
Sbjct: 83  EIDVGGLPNGSD 94


>04_03_0549 - 17043135-17043351,17043641-17043846
          Length = 140

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 363 IMRLIPLPEWSCIYYNNCILDKGL 292
           ++ L+ +P+WS +YY N  +DK L
Sbjct: 72  LILLLLVPKWSIVYYLNSKIDKKL 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,340,255
Number of Sequences: 37544
Number of extensions: 325533
Number of successful extensions: 917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)