Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31029.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              107   9e-24
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           29   2.2  
SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   2.9  
SB_38443| Best HMM Match : Lipoprotein_15 (HMM E-Value=0.14)           29   2.9  
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           29   3.8  
SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)                  27   8.7  
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    27   8.7  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  107 bits (256), Expect = 9e-24
 Identities = 55/103 (53%), Positives = 64/103 (62%)
 Frame = +1

Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLXXAXEAIXNKKR 435
           VYNASNN LVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRK   +     + I NKKR
Sbjct: 66  VYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKR 125

Query: 436 SXKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGR 564
           S    RK  AR+  AKV   +E Q   G  +       GQ GR
Sbjct: 126 SNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGR 168



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 44/62 (70%), Positives = 51/62 (82%)
 Frame = +2

Query: 71  PIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 250
           P+R KRK+EL RP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 251 DV 256
           DV
Sbjct: 64  DV 65


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESH 360
           +++ +N   +    +VK +IV VD  PF  W++ +
Sbjct: 79  MHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 131 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 223
           P++I   ++ GG+TK +ALR++ G ++  S+
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQ 67


>SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 389

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 390 SXLPPKRQRIMRLIPLPEWSCIYYNNCILDKGL-CTHQXIVRCIIHTSMIRVLRVEHSDP 214
           S + P+   I+ +I  P  SC+ ++NC L+  L C      R  + T   R++R +    
Sbjct: 273 SEMTPESYTIVNMIIFPIVSCVAFSNCALNPLLYCYMSQNFRNALKTEWKRLIRRKDDSF 332

Query: 213 QEKLP 199
             +LP
Sbjct: 333 LARLP 337


>SB_38443| Best HMM Match : Lipoprotein_15 (HMM E-Value=0.14)
          Length = 310

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 517 GVCWLAWRVAXGQCGR 564
           G  W+AWRVA   CGR
Sbjct: 270 GALWVAWRVATDACGR 285


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
 Frame = -3

Query: 359 CDSYHCLNGVASTTTIAFLTRVFVRTNXLL--DALYTHQ*YGFCELNIPIPKRSYRCPDA 186
           C  Y C   V +TT +A +  ++++    +   A+  +  + +C  N             
Sbjct: 700 CPGYKCATPVDNTTILALVPELYLKYTSQVRQKAVEANPSWRWCPGNKCSLVNKVTKRSC 759

Query: 185 AHGT*YFHHVNERSGFAEGRAWCLQRDAXTHTSSSC 78
            HG  +  +       A G+ WC +    TH  + C
Sbjct: 760 YHGNTFLDYGGVPVACACGKTWCSECQEETHWPAKC 795


>SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)
          Length = 824

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 118 VCSGTP*LILPLLAYGRTFPSRWPF 44
           + SG     +PL +YGRT   RWP+
Sbjct: 469 ILSGDKGGAVPLFSYGRTTLQRWPY 493


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 108 PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 233
           P ++P   L  +TP VHVV +    R V   +TS+  +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,508,685
Number of Sequences: 59808
Number of extensions: 372574
Number of successful extensions: 869
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)