Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31029.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 139 6e-33
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 139 6e-33
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 139 6e-33
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 139 6e-33
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 129 8e-30
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 43 7e-04
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 31 2.3
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 139 bits (337), Expect = 6e-33
Identities = 86/191 (45%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
+R L L +G F+ + VYNASNN LVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 352 ESHYTLPLGRKXGAKLXXAXEAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWL 531
ESHY LPLGRK GAKL E I NKKRS K +KY R++ AK+ LE Q QG
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 532 AWRVAXGQCGR 564
GQCGR
Sbjct: 174 CIASRPGQCGR 184
Score = 121 bits (291), Expect = 2e-27
Identities = 54/66 (81%), Positives = 58/66 (87%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GKR P KKRKYEL RPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 239 TRIIDV 256
TRIIDV
Sbjct: 76 TRIIDV 81
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 139 bits (337), Expect = 6e-33
Identities = 86/191 (45%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
+R L L +G F+ + VYNASNN LVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 352 ESHYTLPLGRKXGAKLXXAXEAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWL 531
ESHY LPLGRK GAKL E I NKKRS K +KY R++ AK+ LE Q QG
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 532 AWRVAXGQCGR 564
GQCGR
Sbjct: 174 CIASRPGQCGR 184
Score = 121 bits (291), Expect = 2e-27
Identities = 54/66 (81%), Positives = 58/66 (87%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GKR P KKRKYEL RPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 239 TRIIDV 256
TRIIDV
Sbjct: 76 TRIIDV 81
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 139 bits (337), Expect = 6e-33
Identities = 86/191 (45%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
+R L L +G F+ + VYNASNN LVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 352 ESHYTLPLGRKXGAKLXXAXEAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWL 531
ESHY LPLGRK GAKL E I NKKRS K +KY R++ AK+ LE Q QG
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 532 AWRVAXGQCGR 564
GQCGR
Sbjct: 174 CIASRPGQCGR 184
Score = 121 bits (291), Expect = 2e-27
Identities = 54/66 (81%), Positives = 58/66 (87%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GKR P KKRKYEL RPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 239 TRIIDV 256
TRIIDV
Sbjct: 76 TRIIDV 81
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 139 bits (337), Expect = 6e-33
Identities = 86/191 (45%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 13 MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
+R L L +G F+ + VYNASNN LVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 352 ESHYTLPLGRKXGAKLXXAXEAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWL 531
ESHY LPLGRK GAKL E I NKKRS K +KY R++ AK+ LE Q QG
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 532 AWRVAXGQCGR 564
GQCGR
Sbjct: 174 CIASRPGQCGR 184
Score = 121 bits (291), Expect = 2e-27
Identities = 54/66 (81%), Positives = 58/66 (87%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 238
GKR P KKRKYEL RPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 239 TRIIDV 256
TRIIDV
Sbjct: 76 TRIIDV 81
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 129 bits (311), Expect = 8e-30
Identities = 63/103 (61%), Positives = 71/103 (68%)
Frame = +1
Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLXXAXEAIXNKKR 435
VYNASNN LVRTKTLVKN IV++D+TP+RQWYESHY LPLGRK GAKL E I NKKR
Sbjct: 62 VYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR 121
Query: 436 SXKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGR 564
S K +KY R++ AK+ LE Q QG GQCGR
Sbjct: 122 SKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGR 164
Score = 64.9 bits (151), Expect = 2e-10
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = +2
Query: 59 GKRAPIRKKRKYELXRPAANTRLGPQRIHSVRSRGGNTK 175
GKR P KKRKYEL RPAANT++GP+RIH+VR RGG T+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 43.2 bits (97), Expect = 7e-04
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +1
Query: 412 EAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGR 564
E I NKKRS K +KY R++ AK+ LE Q QG GQCGR
Sbjct: 6 EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGR 56
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 31.5 bits (68), Expect = 2.3
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -2
Query: 243 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE----WIR*GPSLVFAAGRXNSYFLFLR 76
R R E PQ+ + V RS R L PPR RT+ W S AG + LR
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQTPVAWCSCSASTAPLAG------VRLR 464
Query: 75 MGARFPAGGP 46
G PAG P
Sbjct: 465 AGLPAPAGAP 474
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,513,736
Number of Sequences: 237096
Number of extensions: 1788749
Number of successful extensions: 3912
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3906
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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