Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31029.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   113   1e-25
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical...    27   7.7  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  113 bits (271), Expect = 1e-25
 Identities = 77/186 (41%), Positives = 93/186 (50%), Gaps = 2/186 (1%)
 Frame = +1

Query: 13  MGISRDHWHKRRATG-WETCAHTQEE-EV*VXASRCKHQARPSANPLRSFTWWKY*VPCA 186
           MGISRD WHKR  TG  +   H + + E+   A+  K  A             KY     
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 187 ASGHR*LLLGIGMFNSQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYT 366
            SG+            +      +YNA+NN LVRTKTLVK AI+ VDA PFRQWYE+HY 
Sbjct: 61  DSGN--FSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYA 118

Query: 367 LPLGRKXGAKLXXAXEAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVA 546
           LPL RK  AKL     AI NKKRS  T +KY  RQ+ A V+  L  Q   G        +
Sbjct: 119 LPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSS 178

Query: 547 XGQCGR 564
            GQ G+
Sbjct: 179 PGQVGQ 184



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
 Frame = +2

Query: 59  GKRAPI-RKKRKYELXRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
           G   P+  KKRK+EL RPAANT++G  R+  VR+RGGN KYRALRLD+GNFSW SE +TR
Sbjct: 15  GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74

Query: 236 KTRIID 253
           KTRI+D
Sbjct: 75  KTRIVD 80


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
            protein C36B7.5b protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 478  AKVEGALEXQSTQGVCWLAWRVAXGQCGRGRWLHLR 585
            +KVE A+         W  W V    CG GR +  R
Sbjct: 1068 SKVESAIGTVQCDWTRWSQWSVCTASCGEGRRMRRR 1103


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
            protein C36B7.5a protein.
          Length = 1121

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 478  AKVEGALEXQSTQGVCWLAWRVAXGQCGRGRWLHLR 585
            +KVE A+         W  W V    CG GR +  R
Sbjct: 1041 SKVESAIGTVQCDWTRWSQWSVCTASCGEGRRMRRR 1076


>AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical
           protein Y66D12A.17 protein.
          Length = 830

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 276 IVRCIIHTSMIRVLRVEHSDPQEKL 202
           I + I H SM R LR+ H DP+  L
Sbjct: 744 IEKAIYHVSMARCLRLMHKDPRVHL 768


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,646
Number of Sequences: 27780
Number of extensions: 256581
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)