Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31029.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...    92   3e-19
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...    91   5e-19
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i...    27   7.2  

>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 44/67 (65%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
 Frame = +2

Query: 59  GKRAPIRKKRKYELXRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
           GK+   RKKRKYEL R  ANT+L   + +  +R RGGN K+RALRLDTGNFSWGSE  TR
Sbjct: 16  GKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTR 75

Query: 236 KTRIIDV 256
           KTRI+DV
Sbjct: 76  KTRILDV 82



 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 68/191 (35%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
 Frame = +1

Query: 13  MGISRDHWHKRRATGWETCAHTQEEEV*VXASRCKHQARPSANPLRSFTWWKY*VPCAAS 192
           MGISRD  HKRRATG +     ++ +      R     + S+N     T  +  V     
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKY--ELGRQPANTKLSSNK----TVRRIRVRGGNV 54

Query: 193 GHR*LLLGIGMFN-------SQNPYH*CVYNASNNXLVRTKTLVKNAIVVVDATPFRQWY 351
             R L L  G F+        +       YNASNN LVRT+TLVK+AIV VDA PF+Q Y
Sbjct: 55  KWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGY 114

Query: 352 ESHYTLPLGRKXGAKLXXAXEAIXNKKRSXKTARKYLARQRLAKVEGALEXQSTQGVCWL 531
             HY + +GRK   +     E     K+S    RK   RQ    ++  LE Q + G    
Sbjct: 115 LQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLA 170

Query: 532 AWRVAXGQCGR 564
                 GQCGR
Sbjct: 171 CIASRPGQCGR 181


>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 41/67 (61%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
 Frame = +2

Query: 59  GKRAPIRKKRKYELXRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 235
           GK+   RKKRKYE+ R  ANT+L   + +  +R RGGN K+RALRLDTGN+SWGSE +TR
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTR 75

Query: 236 KTRIIDV 256
           KTR++DV
Sbjct: 76  KTRVLDV 82



 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 51/113 (45%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
 Frame = +1

Query: 256 VYNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR---------KXGAKLXXA 408
           VYNASNN LVRTKTLVK+AIV VDA PF+QWY SHY + LGR         K G +   A
Sbjct: 83  VYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEA 142

Query: 409 XEAIXNK-KRSXKTARKYLARQRLAKVEGALEXQSTQGVCWLAWRVAXGQCGR 564
             A   + K+S    RK  +RQ    ++  +E Q   G          GQCGR
Sbjct: 143 AVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGR 195



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +1

Query: 13 MGISRDHWHKRRATG 57
          MGISRD  HKRRATG
Sbjct: 1  MGISRDSIHKRRATG 15


>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 691

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 143 HSVRSRG--GNTKYRALRLDTGNFSWGSECSTRKTRIIDVC 259
           HSV   G  G+ +YR +RLD  N S+  E    + RI DVC
Sbjct: 568 HSVLFDGATGHDRYRDMRLDVDNMSY-EELLALEERIGDVC 607


>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 343

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 252 MCV*CI*QXIGAYKDPCQECNCCSRCNS 335
           +CV C+ Q   A   PC    CC+ C+S
Sbjct: 295 LCVICLEQEYNAVFVPCGHMCCCTACSS 322


>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
           identical to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 439

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 68  APIRKKRKYELXRPAANTRLGPQRIHSVRSRGGN 169
           +P+R+ R  ++ R     +  PQR  S  S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,202
Number of Sequences: 28952
Number of extensions: 240966
Number of successful extensions: 576
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)